DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO55 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain 55989 / EAEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO45 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO27 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.375e-13
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+  +     +    + IN GRGP VDE+ L++AL  G +  AGLDVFE+EP   +  L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQNGEIHAAGLDVFEHEPLAKDSPLLSLPNVVALPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = -3 
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H I++   + + P   LIN  RGP V E+ L+ AL +  + GA LDVFE EP + +EL  L+NVV+ PH+G+ T E+R  M+ +V
Sbjct:  216 HQIDKAQFEMMKPTSYLINASRGPIVHEKALVQALKDKEIEGAALDVFEFEPEINDELKTLDNVVITPHIGNATFESRDMMSKIV 300
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: TKRA_DICDI (Probable 2-ketogluconate reductase OS=Dictyostelium discoideum GN=tkrA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = -3 
Query:  337 VLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 558
            + IN GRG  VDE  L+ AL  G++ GAGLDVFE EP +   +L  L+N+VL+PH+G+ T+ET+  M++  + NL
Sbjct:  240 IFINAGRGMTVDEVALIDALETGKIAGAGLDVFEKEPLNKDSKLLTLDNIVLLPHIGTSTIETQHIMSECAVNNL 314
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SHIF8 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri serotype 5b (strain 8401) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.346e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHVAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+  +     +    + IN GRGP VDE+ L++AL  G +  AGLDVFE+EP   +  L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGQAQFAKMKSSAIFINAGRGPVVDEQALIAALQAGEIHAAGLDVFEHEPLAKDSPLLTLPNVVALPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_CITK8 (Glyoxylate/hydroxypyruvate reductase B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.064e-13
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAAQFAKMKSSAIFINAGRGPVVDETALIAALQSGEIHAAGLDVFEQEPLPVDSPLLSLPNVVALPHIGSATHETRYNMAACAVDNL 305
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GHRB_ECO551.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO451.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO271.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO241.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_KLEP71.375e-1344.44Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
Y606_STAS12.346e-1343.53Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
TKRA_DICDI2.346e-1348.00Probable 2-ketogluconate reductase OS=Dictyosteliu... [more]
GHRB_SHIF82.346e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_KLEP33.064e-1344.44Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_CITK83.064e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Citrobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
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