DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.001e-13
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN GRGP V+E  L+ AL + ++ GA LDV+E EP + E L  L+NVV+ PH+G+ T E R  M+ +V
Sbjct:  215 HMIDTEQFKLMKSTAYLINAGRGPIVNEEALVKALEDKQIEGAALDVYEFEPEITEGLKSLDNVVITPHIGNATYEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.913e-13
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E  + +     LIN GRGP V+E+ L+ AL    + GA LDV+E EP + + L   +NVVL PH+G+ T E R  MA +V
Sbjct:  215 HMIDTEQFNKMKSTAYLINAGRGPIVNEQSLVEALDNKAIEGAALDVYEFEPEITDALKSFKNVVLTPHIGNATFEARDMMAKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALPK (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A (strain AKU_12601) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE+EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGTTQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEHEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALPB (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE+EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGTTQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEHEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALPA (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.164e-12
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE+EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGTTQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEHEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
Y752_STAHJ4.001e-1343.53Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y1888_STAEQ8.913e-1343.53Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
GHRB_SALPK1.164e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPB1.164e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPA1.164e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
Y2577_STAA81.520e-1242.35Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2296_STAAC1.520e-1242.35Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA31.520e-1242.35Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW1.520e-1242.35Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS1.520e-1242.35Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
back to top