DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALCH (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella choleraesuis GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.593e-12
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL    + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKNNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTVYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.387e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTVYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP  DE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVADENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: DHGY_CUCSA (Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.424e-12
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = -3
Query:  328 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADL----VLGNLEAH 603
            H++N+E + A+    +LIN  RGP +DE  L+  L +  +   GLDVFE+EP++   L  ++N +++PH+ S +  TR+ MA L    VLG ++ +
Sbjct:  252 HLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGY 347          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I       +    + +NI RG  VDE+ L+ AL EG + GAGLDV+E EP   +  L  L+NV L+PH+GS T + R  M      N+ A
Sbjct:  219 HMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSATAKVRFNMCKQAAENMLA 310          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.855e-12
Identity = 39/105 (37.14%), Postives = 54/105 (51.43%), Query Frame = -3
Query:  313 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVL--------GNLEAHFLNKP 603
            HII RE I  +    +++N  RG  +DE+ L  AL EG++  A LDVFE EP     L  L+NV+  PH G+ T E +K    +V         G L  + +N P
Sbjct:  210 HIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALDVFEEEPPKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKVLRGELAENVVNMP 314          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.287e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = -3
Query:  325 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 603
            H+I+ +    +     ++N  RG  +DE  L  AL +G + GA LDVFE EP     L  LENVVL PH+G+ T E ++  A +V   ++  F
Sbjct:  211 HLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEPPEGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEIKTVF 303          
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GHRB_SALCH1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA41.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
Y2389_STAAR2.593e-1242.35Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2305_STAAM3.387e-1242.35Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2098_STAAN3.387e-1242.35Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
GHRB_SALG24.424e-1242.22Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
DHGY_CUCSA4.424e-1236.46Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-... [more]
TKRA_BACSU9.855e-1240.22Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
SERA_METJA9.855e-1237.14D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH1.287e-1137.63D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
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