DN617474

Overview
NameDN617474
Unique NameDN617474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.046e-16
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            Y PV  CHT+  A     +  K+D +SG+  E+ P ++K GDA +V + PT+PM +E  S+ P LGRFA+RDM  T+A G+  SV +K
Sbjct:  334 YTPVFHCHTAQTACTLMAINKKLDPKSGQVKEENPTYIKAGDAAIVTIKPTRPMCIEPVSEIPQLGRFAIRDMGMTIAAGMCMSVTQK 421          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            Y PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G    +EK
Sbjct:  337 YKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            Y PV   HT+ +A     +  KID  SG+  E+ P F+++GDA +V + P KP+ +E+ ++ P LG FA+RDM QTVA G + SV ++
Sbjct:  335 YTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            Y PV   HT+ +A     +  K+D  SG+  E++P F+K+GDA +V + P KP+ +E  ++ P LG FAVRDM QT+A G +  V+++
Sbjct:  334 YTPVFHAHTAQVACTIESIDQKLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKVLEVDER 421          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.503e-15
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            Y PV   HT+ +A     +  KID  SG+  E+ P F++NGDA +V + P KP+ +E  S+ P LG FA+RDM QT+A G +  V ++
Sbjct:  334 YTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.851e-14
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  405 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 617
            Y PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  326 YTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            Y PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G +  V++
Sbjct:  334 YTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.352e-14
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            Y PV   HT+ +A     +  K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G +  V++
Sbjct:  334 YTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
The following BLAST results are available for this feature:
BLAST of DN617474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_METBU3.046e-1644.32Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_PICTO6.787e-1642.53Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_NATPD7.503e-1542.05Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_HALWD7.503e-1540.91Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_HALMA7.503e-1542.05Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_GIALA2.851e-1450.70Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_HALSA6.352e-1441.38Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS36.352e-1441.38Elongation factor 1-alpha OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617474 ID=DN617474; Name=DN617474; organism=Citrus sinensis; type=EST; length=617bp
ATAATAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCA
ACTTTGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGC
TATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTT
AAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAA
ATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAA
TAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAA
ATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGG
ATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCA
TGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCA
ACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATT
CTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAA
TCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAG
TCAAGCACTGGGGCATA
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