DN617474

Overview
NameDN617474
Unique NameDN617474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.315e-35
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = -1
Query:  345 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPT 617
            YAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D T
Sbjct:  356 YAPVLDCHTAHIACKFSELIEKIDRRTGKSVENNPKFIKSGDAAIVKMVPSKPMCVEPFTDYPPLGRFAVRDMRQTVAVGVIKSVIKSDKT 446          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.718e-35
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  355 YAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.244e-35
Identity = 70/92 (76.09%), Postives = 83/92 (90.22%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK+V+ K+ +G
Sbjct:  357 YAPVLDCHTAHIACKFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKEISG 448          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSVEK D  G
Sbjct:  356 YAPVLDCHTAHIACKFDTLIEKIDRRTGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 447          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.930e-35
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+VEKK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  349 YAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.998e-35
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  349 YAPVLDCHTAHIACKFSELILKMDRRSGKKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.998e-35
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            Y+PVLDCHT+HIA KF  L+ KIDRR+GK++E  PKF+K+GDA +VKM+P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSVEK D  G
Sbjct:  355 YSPVLDCHTAHIACKFDTLLEKIDRRTGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVEKSDKAG 446          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 69/92 (75.00%), Postives = 81/92 (88.04%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK+V KKD +G
Sbjct:  345 YAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSG 436          
The following BLAST results are available for this feature:
BLAST of DN617474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_AJECG1.315e-3576.92Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A_ABSGL1.718e-3576.09Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_ORYLA2.244e-3576.09Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_YARLI2.930e-3573.91Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A2_XENLA2.930e-3580.68Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A0_XENLA2.930e-3581.82Elongation factor 1-alpha, somatic form OS=Xenopus... [more]
EF1AC_PORPU3.827e-3576.09Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A_PORYE4.998e-3576.09Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_PICGU4.998e-3573.91Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_TRYBB6.528e-3575.00Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617474 ID=DN617474; Name=DN617474; organism=Citrus sinensis; type=EST; length=617bp
ATAATAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCA
ACTTTGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGC
TATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTT
AAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAA
ATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAA
TAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAA
ATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGG
ATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCA
TGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCA
ACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATT
CTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAA
TCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAG
TCAAGCACTGGGGCATA
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