DN617404

Overview
NameDN617404
Unique NameDN617404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9470 contig Csv1_Contig9470:34..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 58/202 (28.71%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L     P  S V
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.237e-12
Identity = 58/202 (28.71%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L     P  S V
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 55/187 (29.41%), Postives = 83/187 (44.39%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            H+E    V + P  +     L T S D T KLW+ D   L+ T  GH   +  VA HPSG    + S D   R++D++T A +   E     V+ + F   G  LA + G  +  ++WD  T   I          +KP         V SV +SP+G  +A G  D    ++D+   K L+ + +H
Sbjct:  297 HKERATDVVFSPVDDC----LATASADRTAKLWKTDGTLLQ-TFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDG-ALAASCGLDSLARVWDLRTGRSILVFQ----GHIKP---------VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAH 464          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12
Identity = 45/167 (26.95%), Postives = 77/167 (46.11%), Query Frame = 3
Query:  102 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            + TGS D+T KLW  +  +   T  GH   +V ++ +P   + A+ S+D+  +++D+ +   + TL    +E+  + FD  G  + + G    +V +WD +T   + TL     E             + S  +S D   I  GSMD T  ++D T  K +  L  H
Sbjct:  150 IATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRI-ITGSFDHTVVVWDASTGRKVHTLIGHCAE-------------ISSALFSWDCSLILTGSMDKTCMLWDATSGKCVATLTGH 302          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR69_XENTR (WD repeat-containing protein 69 OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 51/175 (29.14%), Postives = 79/175 (45.14%), Query Frame = 3
Query:   78 ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            A   +  L+ TGS+D T KLW     +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A  S DGT  V+  +  K L  LE H
Sbjct:  184 AFNPQSTLIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATA-SMDKSCKLWDSLNGKCVATLTGHEDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGH 344          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 49/176 (27.84%), Postives = 84/176 (47.73%), Query Frame = 3
Query:   99 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            L++ GS   ++++W  +  ++ RT  GH   V S+  HP G   AS SLD+ ++++DV     +   +     V  ++F P G  LA A     SVKLWD     ++A L             S  K  V  + + P+   +A GS D T+  +D+ + + +   E   +PVR+++
Sbjct:   77 LIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASA-SDDHSVKLWDLTAGKMMAEL-------------SEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAIL 238          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 49/176 (27.84%), Postives = 84/176 (47.73%), Query Frame = 3
Query:   99 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSLV 626
            L++ GS   ++++W  +  ++ RT  GH   V S+  HP G   AS SLD+ ++++DV     +   +     V  ++F P G  LA A     SVKLWD     ++A L             S  K  V  + + P+   +A GS D T+  +D+ + + +   E   +PVR+++
Sbjct:   77 LIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASA-SDDHSVKLWDLTAGKMMAEL-------------SEHKGPVNIIEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAIL 238          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 49/175 (28.00%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 566
            H   + +VT+    +    L+  G+   T+KLW  ++ ++ RT TGH    +SV  HP G   AS SLD+ ++++D+     I T +     V  ++F P G  + V+GG    VK+WD     L+             T+  S +  + S+ + P    +A GS D T+  +D+
Sbjct:   58 HSSGIDSVTF----DASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWV-VSGGEDNIVKVWDLTAGKLL-------------TEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDL 214          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 52/176 (29.55%), Postives = 82/176 (46.59%), Query Frame = 3
Query:   36 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD 563
            + H ++V AV + P      +LL +GS D TV LW         T  GH  GV  VA +P+G   A+A+ D  ++++D +T A + TL    + V+   FD     L  +G    +++LWD  +   +  +    P    P         V S A+S DG  +   S+DG I ++D
Sbjct:   37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWD 195          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 49/179 (27.37%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   33 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 569
            ++ H +    V + P T+    ++++   D  VK+W   + +L+  + GH   V +V   P G + AS   DS   ++D++    + TL+ +   +  + F P    L VA G   S+K+WD     ++  L   +PE +  T K+ +    LS+AWS DG+ +  G  D  I V+ V+
Sbjct:  144 DDCHTDWTSCVRFSPNTQN--PIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASG--PSIKIWDLEGKVVVDEL---KPEVMGTTSKAPT---CLSLAWSADGQTLFAGYTDKLIRVWQVS 312          
The following BLAST results are available for this feature:
BLAST of DN617404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WDR5_HUMAN1.237e-1228.71WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN1.237e-1228.71WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
PRP4_ARATH1.615e-1229.41U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
WDR69_RAT2.755e-1226.95WD repeat-containing protein 69 OS=Rattus norvegic... [more]
WDR69_XENTR3.598e-1229.14WD repeat-containing protein 69 OS=Xenopus tropica... [more]
KTNB1_XENTR3.598e-1227.84Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENLA4.699e-1227.84Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_ARATH4.699e-1228.00Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
MUT11_CHLRE6.137e-1229.55Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
GBLP_BIOGL6.137e-1227.37Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617404 ID=DN617404; Name=DN617404; organism=Citrus sinensis; type=EST; length=627bp
ACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAG
TCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCT
CTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACG
ACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCT
GTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAG
CTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCG
AAGCTTCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACC
ACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACAC
AGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGAC
TGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCA
TGGAGTCCTGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAAT
TTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGAAAGCC
ATTTCATGCCTGTGCGTTCTCTTGTTT
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