DN617404

Overview
NameDN617404
Unique NameDN617404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9470 contig Csv1_Contig9470:34..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR69_XENLA (WD repeat-containing protein 69 OS=Xenopus laevis GN=wdr69 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = 3
Query:   99 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            L+ TGS+D T KLW     +   T +GH   ++S++ + +G    + S D  V V+++ +   I TL     E+   QF+   + +A A     S KLWD+     +ATL+    E             VL V +   G+ +A  S DGT  V+  +  K L  LE H
Sbjct:  191 LIATGSMDTTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLIGHRGEISSAQFNWDCSLIATA-SMDKSCKLWDSLNGKCVATLTGHDDE-------------VLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGH 344          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 3
Query:   36 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI---PRPEGLKPTDKSSSKK--FVLSVAWSPDGRRIACGSMDGTISVFDVTR 572
            +AH + V  V + P+T      +++ S D TVK+W   + +L  T  GH   V +VA  P G + AS   D  + ++D+     + +L+A  S +  + F P    L  A    +S+K+WD  + +++  L +      +     D ++ KK  +  S+ WS DG  +  G  DG + V+ + R
Sbjct:  146 DAHSDWVSCVRFSPSTPQ--PTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-SIIHALCFSPNRYWLCAA--TESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGR 324          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 47/155 (30.32%), Postives = 76/155 (49.03%), Query Frame = 3
Query:   96 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 560
            +L+LTGS+D+T KLW   + +   T TGH   ++      +G + A+AS D   R+F   T   IA LE    E+ ++ F+P+G  L + G    + ++WD  T   +  L     EG   TD+      + S A++  G  +  GS D T  ++
Sbjct:  274 SLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHL-LTGSSDKTARIWDAQTGQCLQVL-----EG--HTDE------IFSCAFNYKGNIVITGSKDNTCRIW 414          

HSP 2 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 48/168 (28.57%), Postives = 73/168 (43.45%), Query Frame = 3
Query:   99 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESH 602
            L+ TGS+D T KLW   + +   T  GH   ++S++ + SG    + S D  V V+D DT   +  L    +E+    F+    +L + G    + KLWD      +ATL+    E             +L   +   G+ IA  S DGT  +F     K +  LE H
Sbjct:  191 LVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFN-WDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGH 344          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 51/189 (26.98%), Postives = 90/189 (47.62%), Query Frame = 3
Query:   21 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL-------GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 566
            ++ V + HE+ ++++ +          +++GS D T +LW  +        TG C+       GV ++A  P+    A  SLD  +RV+ V +   +  LE     V+ + F P  + L ++G    ++K+W+      +  LS  +PEG+     +    FVLSVA SPD R    GS D ++  +D+
Sbjct:  394 VRYVFSGHEQDIYSLDF----SHNGRFIVSGSGDRTARLWDVE--------TGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLEGHKESVYSIAFSPDSSIL-LSGSLDKTIKVWELQATRSVG-LSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDL 567          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 52/183 (28.42%), Postives = 87/183 (47.54%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 572
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA+ S +  + F P    L  A      +K+WD  + +++  L +      +  D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 566
            H E V  V + P T T P ++++G  D+ VK+W   + +L+    GH   V +V   P G + AS   D    ++D+     + +L+A    +  + F P    L  A    +S+K+WD  + +++  L   RPE    T K +   + +S+AWS DG  +  G  DG I V+ V
Sbjct:  149 HTEWVSCVRFSPMT-TNP-IIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAG-DVIHCLCFSPNRYWLCAA--TQSSIKIWDLESKSIVDDL---RPE-FNITSKKAQVPYCVSLAWSADGSTLYSGYTDGQIRVWAV 314          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 3
Query:  108 TGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 593
            TGS D+ +K+W   DM   +T   H LG+   +   +    ASAS D+ V++FDV + A + T+    + V+   F+P+ + +A A G   +V++WD  T   +  +    P    P         + S++++ DG  +A  S DG I V+D      L  L
Sbjct:  230 TGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASA-GFDETVRVWDFKTGLCVKCI----PAHSDP---------ITSISYNHDGNTMATSSYDGCIRVWDAASGSCLKTL 377          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 54/184 (29.35%), Postives = 83/184 (45.11%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL 593
            HE+SV  V+  P        + T S D T+K+W     +LE T  GH  G+  V         ASAS D  +R++D +   S+  L+   + V  + F+P G TL V+G    +V++W+      +  L    P   +P         ++SV+ S DG   A  S DG   ++DV   + L  L
Sbjct:   53 HEKSVTCVSVSP----NKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLG-TLLVSGSWDETVRIWNLQDGTCLRML----PAHSEP---------IISVSISADGTLCATASYDGMARIWDVLSGQCLKTL 218          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   93 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 560
            P  L++GS D T+ LW P +D +     TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKL-------------ATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 51/184 (27.72%), Postives = 91/184 (49.46%), Query Frame = 3
Query:   36 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 572
            ++H + V  V + P    +P ++ +GS D TVK+W   + +L  T  GH   V + A  P G + AS   D  + ++D+     + +LE S S +  + F P    L  A    +S+K+WD  + +++  L +  + E    ++ ++S K    +  S++WS DG  +  G  DG I V+ + R
Sbjct:  147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLE-SGSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIDR 325          
The following BLAST results are available for this feature:
BLAST of DN617404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WDR69_XENLA8.015e-1229.76WD repeat-containing protein 69 OS=Xenopus laevis ... [more]
GBLP_MEDSA1.047e-1127.17Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_HUMAN1.367e-1130.32WD repeat-containing protein 69 OS=Homo sapiens GN... [more]
TUP11_SCHPO1.367e-1126.98Transcriptional repressor tup11 OS=Schizosaccharom... [more]
GBLP_ARATH1.367e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE1.786e-1129.71Guanine nucleotide-binding protein subunit beta-li... [more]
YH92_CAEEL2.332e-1129.01Uncharacterized WD repeat-containing protein ZC302... [more]
SWD3_SCHPO2.332e-1129.35Set1 complex component swd3 OS=Schizosaccharomyces... [more]
NLE1_MOUSE2.332e-1129.94Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
GBLP_TOBAC2.332e-1127.72Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617404 ID=DN617404; Name=DN617404; organism=Citrus sinensis; type=EST; length=627bp
ACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAG
TCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCT
CTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACG
ACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCT
GTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAG
CTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCG
AAGCTTCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACC
ACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACAC
AGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGAC
TGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCA
TGGAGTCCTGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAAT
TTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGAAAGCC
ATTTCATGCCTGTGCGTTCTCTTGTTT
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