DN617404

Overview
NameDN617404
Unique NameDN617404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9470 contig Csv1_Contig9470:34..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: NLE1_HUMAN (Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   93 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 560
            P  L++GS D T+ LW P + +   T  TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L   L     E             V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 3
Query:   33 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 569
            ++ H + V  V + P+   R  ++++   D+ VK+W   + +L+  + GH   V +V   P G + AS   D    ++D++    + TL  +   +  M F P    L  A G  +S+K+WD      I  L   +PE         S    +S+AWS DG+ +  G  D  I V+ V+
Sbjct:  150 DDCHTDWVSTVRFSPSN--RDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGN-DVINAMSFSPNRYWLCAAVG--SSIKIWDLEDKKEIEEL---KPEIASSGSSRGSSPQCISLAWSQDGQTLFAGYTDNIIRVYQVS 320          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: CIAO1_SCHJA (Probable cytosolic iron-sulfur protein assembly protein OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 54/194 (27.84%), Postives = 80/194 (41.24%), Query Frame = 3
Query:   42 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF--DVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-------TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLH 587
            H   V  V W P+      L+ T   D++V LW  DD   +Q       H   V SVA HP G +  S S D+ + V+  ++D     A L    S VW+ +F P G  LA +      VKLW        +++W  IATLS                + +  + WSPD + +A    D  + ++ +      H
Sbjct:  107 HTSEVKCVAWCPSGH----LIATCGRDKSVWLWEFDDEEDVQCVSVLQPHSQDVKSVAWHPHGEVLVSTSYDNKINVYREELDDWTVFAQLSGHDSTVWKAEFSPSGDILA-SCSDDLCVKLWSWEGVCGKSSSWMCIATLS------------GYHTRTIFDLNWSPDSQLLASCGSDNRLCIYKMPANGLTH 283          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: PRP46_SCHPO (Pre-mRNA-splicing factor prp46 OS=Schizosaccharomyces pombe GN=prp5 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 54/187 (28.88%), Postives = 77/187 (41.18%), Query Frame = 3
Query:   69 WVPATETRPA--LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLESHFMPVRSL 623
            WV   +  P      TG+ D T+K+W      L+ T TGH   V  +A  P      S   D  V+ +D++TN  I       S V+ ++  P    L V  G  A  ++WD  T   +  L             S  K  V S+A      ++  GSMD TI ++D+   K L  L  H   VR+L
Sbjct:  165 WVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVL-VTAGRDAVARVWDMRTRQNVHVL-------------SGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRAL 337          
BLAST of DN617404 vs. ExPASy Swiss-Prot
Match: HIR1_CRYNE (Protein HIR1 OS=Cryptococcus neoformans GN=HIR1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 56/191 (29.32%), Postives = 84/191 (43.98%), Query Frame = 3
Query:   36 NAHEESVWAVTWVPATETRPALLLTGSLDETV-----------KLWRPDDMQLERTNT-----GHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIAC-GSMDGTISV 557
            ++H  SV +V W          L TGS D+ +           +LW  D++ +E         GH   VV +A      + AS  LDS V ++D  T   +  L+     V  + +DP G  LA       +VK+W+T  W+L  T+S       KP + S    F   ++WSPDG  IA   +M+G + V
Sbjct:   70 SSHTGSVLSVRWAH----HGRFLATGSDDQVIMIWGLDPDGGGRLWGSDEINVENWKALTRLVGHVADVVDLAWSRDDTMLASVGLDSTVWIWDGLTFERLRKLDLHQGFVKGVCWDPVGNYLATQ-SDDKTVKIWNTEDWSLAETIS-------KPFETSPQSTFFRRLSWSPDGAFIAASNAMNGPVFV 248          
The following BLAST results are available for this feature:
BLAST of DN617404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
NLE1_HUMAN6.785e-1129.94Notchless protein homolog 1 OS=Homo sapiens GN=NLE... [more]
GBLP_CAEEL6.785e-1126.82Guanine nucleotide-binding protein subunit beta-2-... [more]
CIAO1_SCHJA6.785e-1127.84Probable cytosolic iron-sulfur protein assembly pr... [more]
PRP46_SCHPO8.862e-1128.88Pre-mRNA-splicing factor prp46 OS=Schizosaccharomy... [more]
HIR1_CRYNE8.862e-1129.32Protein HIR1 OS=Cryptococcus neoformans GN=HIR1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01C14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617404 ID=DN617404; Name=DN617404; organism=Citrus sinensis; type=EST; length=627bp
ACCAAATGAAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAG
TCAGTATGGGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCT
CTTGCTGACGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACG
ACATGCAGCTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCT
GTGGCAGCGCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAG
CTTTGTTCGAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCG
AAGCTTCTCCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACC
ACTCTAGCTGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACAC
AGCCACTTGGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGAC
TGAAGCCGACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCA
TGGAGTCCTGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAAT
TTCTGTTTTTGATGTTACCCGTGCCAAATTCCTGCATCATCTGGAAAGCC
ATTTCATGCCTGTGCGTTCTCTTGTTT
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