DN617384

Overview
NameDN617384
Unique NameDN617384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7802 contig Csv1_Contig7802:26..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:  147 EAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            E   + N A   GD+  A+  + EA+++ P N +LYSNRSAA+  +  Y  AL DA K   L P W K Y R G A   L  + +A+ ++  GL  DP +
Sbjct:   60 EKVRQSNQACHDGDFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKS 159          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: SPAG1_MOUSE (Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  138 MADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNNE 449
            +A+  K KGN AF SGDYE AV ++T ++S  P   + Y+NR+ A   L  ++ AL D +K +EL P   K   R    +       EAV+  +K L ++P+N+
Sbjct:  212 LANREKGKGNEAFYSGDYEEAVMYYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 314          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: DNJC7_PONAB (DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.959e-12
Identity = 35/102 (34.31%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            A+  K +GNA ++  DY  A  ++T+AI + P N   Y NR+A    L  + +AL DA+++V L   + +G  R G  HL L + + A  S+++ L++D  N
Sbjct:   28 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALELDHKN 129          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  153 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            K KGN  F  G Y+ A+  +T+ +   P N VL +NR++A+  L  +A A +D    + L   ++K Y+R GAA   LQ   +A   Y+K L+++P+N
Sbjct:  138 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDN 235          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: TTC31_HUMAN (Tetratricopeptide repeat protein 31 OS=Homo sapiens GN=TTC31 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  141 ADEAKAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGL 428
            + E    G +   +G Y  AV  FT+A+ L+P +H L+ NRS  H  L   A ALADA+  + L+P W +G  RLG A +GLQ + EA   +++ L
Sbjct:  305 SQELAKLGTSFAQNGFYHEAVVLFTQALKLNPQDHRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGLQRFREAAAVFQETL 400          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  153 KAKGNAAFSSGDYEAAVRHFTEAISLSPDNHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDIDPNN 446
            K KGN  F  G Y+ A+  +T+ +   P N VL +NR++A+  L  +A A +D    + L   ++K Y+R GAA   LQ   +A   Y K L+++P+N
Sbjct:  137 KEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDN 234          
BLAST of DN617384 vs. ExPASy Swiss-Prot
Match: TTC4_BOVIN (Tetratricopeptide repeat protein 4 OS=Bos taurus GN=TTC4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 43/105 (40.95%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  135 DMADEAKAKGNAAFSSGDYEAAVRHFTEAIS---LSPD-NHVLYSNRSAAHASLHNYADALADAKKTVELKPDWSKGYSRLGAAHLGLQDYIEAVNSYKKGLDID 437
            D A   K +GN  F   DY+ AV  +TE +      PD N VLY+NR+AA   L N+  +L D     +LKP   K   R  + HL L++Y+EAVN   +GL ID
Sbjct:   77 DQARTYKDEGNDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSSLNDVTAARKLKPCHLKAIIRGASCHLELKNYVEAVNWCDEGLQID 181          
The following BLAST results are available for this feature:
BLAST of DN617384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
TTC28_HUMAN4.080e-1238.00Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
SPAG1_MOUSE4.080e-1236.54Sperm-associated antigen 1 OS=Mus musculus GN=Spag... [more]
DNJC7_PONAB6.959e-1234.31DnaJ homolog subfamily C member 7 OS=Pongo abelii ... [more]
RPAP3_MOUSE9.088e-1235.71RNA polymerase II-associated protein 3 OS=Mus musc... [more]
TTC31_HUMAN1.550e-1139.58Tetratricopeptide repeat protein 31 OS=Homo sapien... [more]
RPAP3_RAT1.550e-1135.71RNA polymerase II-associated protein 3 OS=Rattus n... [more]
TTC4_BOVIN5.891e-1140.95Tetratricopeptide repeat protein 4 OS=Bos taurus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01C04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617384 ID=DN617384; Name=DN617384; organism=Citrus sinensis; type=EST; length=585bp
CTCCCACTCTTCTTTTATATTTGAAACTAATCGTTTTCTTAGCTACAAAG
GAGAAGTTCAAAGGGCAGTACTTTACTCTAAATATTACTGCAACCACAAC
CACAAGCCAATCATTCTTCAATTAATTCCTTGCTGACATGGCAGACGAAG
CCAAAGCGAAAGGAAACGCTGCGTTTTCGTCCGGGGATTACGAAGCCGCG
GTGCGCCACTTCACGGAGGCCATCTCTTTATCTCCGGATAATCACGTGCT
GTATTCCAATCGATCCGCCGCGCACGCTTCTCTCCACAACTACGCCGACG
CCTTAGCCGACGCCAAGAAGACCGTCGAGCTTAAGCCGGACTGGTCCAAA
GGCTACAGCCGACTTGGCGCTGCTCACCTCGGATTACAGGACTATATCGA
AGCTGTTAACTCCTACAAGAAAGGACTTGATATCGATCCTAACAATGAAG
CCCTCAAATCCGGCTTGGCCGATGCTAAAGCGGCGGCCTCCGCGTCGTTC
AGATCTCGTTCCCCGCCGGCCGATAATCCATTTGGTTCTGCTTTTGCCGG
ACCTGAGATGTGGGCAAAATTAACGGCGGATCCGA
back to top