DN617376

Overview
NameDN617376
Unique NameDN617376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617376_ssr714 microsatellite DN617376_ssr714:714..725. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6837 contig Csv1_Contig6837:456..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_DROME (V-type proton ATPase subunit E OS=Drosophila melanogaster GN=Vha26 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.276e-27
Identity = 67/178 (37.64%), Postives = 115/178 (64.61%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ L ++ EP V+LRCR+ D  LV +VL +A E+Y  ++  +  E+ +D + +L               GGV + + +G+I   NTL++RLD++ ++ +PEIR  L
Sbjct:   49 QRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQINQN-VELFIDEKDFL----------SADTCGGVELLALNGRIKVPNTLESRLDLISQQLVPEIRNAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE2_HUMAN (V-type proton ATPase subunit E 2 OS=Homo sapiens GN=ATP6V1E2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 69/178 (38.76%), Postives = 108/178 (60.67%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQ+E +KKI  S   N +R+KVL+A++DL+S+++  A   +  +  D   Y+ LL  L++Q LLRL EP +++RCR  D  LVE+ ++ A  EY    Q H  E+ +D + YL            + +GGV V S + +I   NTL++RLD+  ++K+PEIR  L
Sbjct:   49 QRLKIMEYYEKKEKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKH-VEVQIDKEAYL----------AVNAAGGVEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D + YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   49 QRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYL----------PEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE1_BOVIN (V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D + YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   49 QRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYL----------PEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE1_MACFA (V-type proton ATPase subunit E 1 OS=Macaca fascicularis GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D + YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   49 QRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYL----------PEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE1_HUMAN (V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D + YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   49 QRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYL----------PEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE1_RAT (V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.467e-26
Identity = 66/180 (36.67%), Postives = 112/180 (62.22%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D + YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   49 QRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDLEAYL----------PEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_MANSE (V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.834e-26
Identity = 69/178 (38.76%), Postives = 111/178 (62.36%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            ++ KI + YE+KEKQVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K +  V +D   Y  LL  LIVQ+L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D++ +L           P   GG+ + +  G+I   NTL++RL+++ ++ LPEIR  L
Sbjct:   49 QRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFL----------PPDTCGGIELIAAKGRIKISNTLESRLELIAQQLLPEIRNAL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE2_MOUSE (V-type proton ATPase subunit E 2 OS=Mus musculus GN=Atp6v1e2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 68/175 (38.86%), Postives = 105/175 (60.00%), Query Frame = -2
Query:  202 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR 726
            ++ KI   +E+KEKQ+E +KKI+ S   N +RI VL+A+D+L+  +++ A   +  +  D   Y+ LL  L++Q+LLRL EP +++RCR  D HLVES +  A  +Y +  Q H  E+ VD   +L            + +GGV V S D KI   NTL++RL++   +K+PEIR
Sbjct:   49 QRLKIMDYFEKKEKQIEQQKKIQLSTMRNQARITVLRARDNLILELLKDAKMRLSRIVSDEEIYQDLLDKLVLQALLRLLEPVMIVRCRPQDLHLVESAVLRAIPQYMRLCQKH-LEVQVDQTEHL----------PSNAAGGVEVYSSDQKIKVSNTLESRLNLAAMQKMPEIR 212          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_DICDI (V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.217e-25
Identity = 62/178 (34.83%), Postives = 111/178 (62.36%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            EK KI +EYE+K+K +E++KKI  S +LN SR+ VL+ +++ + ++++ A K++  +S D + Y+ +LK LI Q  ++L E  + +  RK+D  L+E     A  +Y + +     ++ VD + +L           P+C GGV++++ +G+I+C+NTLD+RL++ F +  P IR QL
Sbjct:   47 EKIKIIKEYEKKQKLIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVG-KSIDVSVDKERFL-PQGPKSDYNGPTCCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIRTQL 222          
The following BLAST results are available for this feature:
BLAST of DN617376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_DROME5.276e-2737.64V-type proton ATPase subunit E OS=Drosophila melan... [more]
VATE2_HUMAN2.005e-2638.76V-type proton ATPase subunit E 2 OS=Homo sapiens G... [more]
VATE1_MOUSE2.005e-2636.67V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]
VATE1_BOVIN2.005e-2636.67V-type proton ATPase subunit E 1 OS=Bos taurus GN=... [more]
VATE1_MACFA3.420e-2636.67V-type proton ATPase subunit E 1 OS=Macaca fascicu... [more]
VATE1_HUMAN3.420e-2636.67V-type proton ATPase subunit E 1 OS=Homo sapiens G... [more]
VATE1_RAT4.467e-2636.67V-type proton ATPase subunit E 1 OS=Rattus norvegi... [more]
VATE_MANSE5.834e-2638.76V-type proton ATPase subunit E OS=Manduca sexta GN... [more]
VATE2_MOUSE1.300e-2538.86V-type proton ATPase subunit E 2 OS=Mus musculus G... [more]
VATE_DICDI2.217e-2534.83V-type proton ATPase subunit E OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617376 ID=DN617376; Name=DN617376; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTCCAAGAACAGATTCACTGATTTTCACAAATAAAGATATTCTGC
AAACATTATAATTTAAAATATGCAAACAAACAGTACATAATAAATTTTTA
TGGTCAATAACTAAACTTAAAAACTTCGGACATGAATAATCAGAGGGTGA
CAATCAATTCAAATTAACTCATCATGCAGCAACCTGACTGACGAGCTGCT
TCCGGATCTCAGGAAGTTTTTTACGGAACACAACATCCAACCGTGCATCA
AGGGTATTCTCACATACTATCTTCCCATCTCGAGAAGCCACCACGACACC
TCCTGAGCAGGATGGACCATGGGCATTATGATGGCCAGGGCCAGGCGGAA
GATAGATTTGATGATCCACAATTATCTCTGGTGGGTGAACCTGCAATTTC
TGTGCATATTCCTCTTTTGCTGACTCCAAAACAGACTCCACCAAATGATG
GTCATCTTTGCGGCATCTCAGTAACACAGCTGGCTCTTTCAGCCTGAGCA
AACTCTGAACAATAAGACCCTTCAAAAGCTTCTTATATGAATTGTGATCT
CGACTCACATTCAAAACCTCCTTTGATGCTGCCTCCATCATATTACTGAC
CAAATCATCCTGAGCTTGAAGAACTTTGATCCGAGAAGCATTCAGCTGCA
TGGAGTACTCAATCTTCTTTCTGATTTCGACTTGCTTCTCTTTCCGCTCG
TACTCTTGTCTGATCTTCTTCTTCTCTGCT
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