DN617376

Overview
NameDN617376
Unique NameDN617376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617376_ssr714 microsatellite DN617376_ssr714:714..725. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6837 contig Csv1_Contig6837:456..1184. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_YEAST (V-type proton ATPase subunit E OS=Saccharomyces cerevisiae GN=VMA4 PE=1 SV=4)

HSP 1 Score: 91.2781 bits (225), Expect = 5.847e-18
Identity = 56/178 (31.46%), Postives = 94/178 (52.81%), Query Frame = -2
Query:  193 EKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 726
            E   I   ++ K K+  + ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D  L+ES+ +    EY +K Q  P E IV    YL              SGGVVV++   KI   NTL+ RL ++  + LP IR +L
Sbjct:   54 ETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYLNKDL---------VSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLEL 222          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 51/179 (28.49%), Postives = 96/179 (53.63%), Query Frame = -2
Query:  193 AEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 729
            +E   I   YE+K K+  + ++I  S   N +R+++L  +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D  + +  +  A + + +K +    EI +D + +L              +GG+VV +  GKI  +NTL+ RL ++  + LP IR +L
Sbjct:   48 SETAAIDSTYEQKLKKASLAQQITKSTIGNKTRLRILSTKDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQDVDVAKEAITEAAKNFEEKAK-FKVEISIDDKNFL----------AKDIAGGIVVVNGSGKIEVDNTLEERLKILSEEALPAIRLEL 215          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_NEUCR (V-type proton ATPase subunit E OS=Neurospora crassa GN=vma-4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 51/188 (27.13%), Postives = 90/188 (47.87%), Query Frame = -2
Query:  184 EKKKIRQE-------YERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 726
            + K +RQE       Y +K KQ ++ ++I  S   N +R++VL A+ +L+  + EAAS ++   + D   YK +L+ LI++    + EP +++R R+ D+  V      A  +Y  K        I                     +GG+++   +GKI  +NT +ARL ++    LP +RK L  +
Sbjct:   46 KSKLVRQETDAIDSAYAKKFKQAQMSQQITRSTMANKTRLRVLGARQELLDEIFEAASAQLGQATHDLGRYKDILRDLILEGFYAMNEPELVIRARQADYDAVREAAGWASAQYKHKTDKDVKATI-----------DAENPVPEGSAGGIIIVGGNGKIDIDNTFEARLTLLKDSALPAMRKALFGE 222          
BLAST of DN617376 vs. ExPASy Swiss-Prot
Match: VATE_SCHPO (V-type proton ATPase subunit E OS=Schizosaccharomyces pombe GN=vma4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 52/177 (29.38%), Postives = 91/177 (51.41%), Query Frame = -2
Query:  184 IRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHQIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 714
            I Q Y+ K K+  + +KI  S  LN SR+++L ++  ++ ++     K++  + +  ++Y K +  LIVQ++  L EP  ++  R+ D  +V++ +  A E    K      E+  +   +L            S  GGVV+    GKI  +NTL ARL++V  + LPEIR+ L  +
Sbjct:   53 IDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFL----------NDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGE 219          
The following BLAST results are available for this feature:
BLAST of DN617376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_YEAST5.847e-1831.46V-type proton ATPase subunit E OS=Saccharomyces ce... [more]
VATE_CANAL3.790e-1728.49V-type proton ATPase subunit E OS=Candida albicans... [more]
VATE_NEUCR4.633e-1527.13V-type proton ATPase subunit E OS=Neurospora crass... [more]
VATE_SCHPO7.903e-1529.38V-type proton ATPase subunit E OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01B24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617376 ID=DN617376; Name=DN617376; organism=Citrus sinensis; type=EST; length=730bp
TTTTTTTCCAAGAACAGATTCACTGATTTTCACAAATAAAGATATTCTGC
AAACATTATAATTTAAAATATGCAAACAAACAGTACATAATAAATTTTTA
TGGTCAATAACTAAACTTAAAAACTTCGGACATGAATAATCAGAGGGTGA
CAATCAATTCAAATTAACTCATCATGCAGCAACCTGACTGACGAGCTGCT
TCCGGATCTCAGGAAGTTTTTTACGGAACACAACATCCAACCGTGCATCA
AGGGTATTCTCACATACTATCTTCCCATCTCGAGAAGCCACCACGACACC
TCCTGAGCAGGATGGACCATGGGCATTATGATGGCCAGGGCCAGGCGGAA
GATAGATTTGATGATCCACAATTATCTCTGGTGGGTGAACCTGCAATTTC
TGTGCATATTCCTCTTTTGCTGACTCCAAAACAGACTCCACCAAATGATG
GTCATCTTTGCGGCATCTCAGTAACACAGCTGGCTCTTTCAGCCTGAGCA
AACTCTGAACAATAAGACCCTTCAAAAGCTTCTTATATGAATTGTGATCT
CGACTCACATTCAAAACCTCCTTTGATGCTGCCTCCATCATATTACTGAC
CAAATCATCCTGAGCTTGAAGAACTTTGATCCGAGAAGCATTCAGCTGCA
TGGAGTACTCAATCTTCTTTCTGATTTCGACTTGCTTCTCTTTCCGCTCG
TACTCTTGTCTGATCTTCTTCTTCTCTGCT
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