DN617310

Overview
NameDN617310
Unique NameDN617310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKLI PDG + EF+ PDD YIL+ AE+ G+++PYSCRAG+CS+CAG +V+GSVDQSD SFLDD Q+E+G+VLTC+AYPKSD  I THKE E
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 65/96 (67.71%), Postives = 81/96 (84.38%), Query Frame = -1
Query:  195 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 482
            MA YKVKLI PDG   EFD PD+ YILD AE+AG +LPYSCRAG+CS+CAG +  G+VDQ+DG+FLDD+Q+E+G+VLTC+AYP+SD  I THKE+E
Sbjct:   47 MASYKVKLITPDGPI-EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAE 141          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.101e-33
Identity = 65/95 (68.42%), Postives = 80/95 (84.21%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKLI PDG   EFD PDD YILD AE+AG +LPYSCRAG+CS+CAG +  G+VDQ+DG+FLDD+Q+E+G+VLTC+AYP+SD  I THKE+E
Sbjct:    1 ASYKVKLITPDGPI-EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 6.662e-33
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ P+GE  E + PDD YILD AE+ G++LPYSCRAG+CS+CAG +VSG +DQSD SFLDD+QME G+VLTC AYPKSD VI THKE E
Sbjct:   47 ATYKVKLVTPEGEV-ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEE 140          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.662e-33
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G ELPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+QM  G+VLTC+AYPKSD  I THKE +
Sbjct:    1 ATYKVKLVTPDGPI-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEED 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.662e-33
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G ELPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+QM  G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32
Identity = 65/95 (68.42%), Postives = 77/95 (81.05%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G ELPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+QM  G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.136e-32
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = -1
Query:  201 MAVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 482
            MA YKVK I P+GE+ E +  +D Y+LD+AE+AG++LPYSCRAG+CS+CAG +VSGS+DQSD SFLDD QM +GYVLTC+AYP SD VI THKE
Sbjct:   52 MATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.532e-32
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G +LPYSCRAG+CS+CAG + +G+VDQSDG++LDD+QM +G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEE 94          
BLAST of DN617310 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.532e-32
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  195 AVYKVKLIGPDGEENEFDAPDDAYILDSAEDAGMELPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 479
            A YKVKL+ PDG   EFD PDD YILD AE+ G +LPYSCRAG+CS+CAG + +G+VDQSDG++LDD+QM +G+VLTC+AYP+SD  I THKE E
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEE 94          
The following BLAST results are available for this feature:
BLAST of DN617310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SAMNI5.101e-3368.42Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_CAPAN5.101e-3367.71Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER_CAPAA5.101e-3368.42Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER_WHEAT6.662e-3369.47Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_SOLNI6.662e-3368.42Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_DATAR6.662e-3368.42Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_ATRBE1.136e-3268.42Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_ARATH1.136e-3268.09Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_DATME2.532e-3266.32Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN2.532e-3266.32Ferredoxin OS=Datura inoxia PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617310 ID=DN617310; Name=DN617310; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTCTCTCTACCATATGTTGCATATCATAAACATGAAAGACTTAACA
CCAAATGGTAATGAAAAAGTTCATCGTCACAAGTGAAATGGAAAGCATTT
GTTCAGACCGACTCACAATGATCTACTGCTTTAGCACAAATAGAAAGCAC
AAAGCAGAAAGCAAAAGCCAAGATCATAACATTATTTAGTTAAGTTCAGA
TTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGCATG
TAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCT
GATTGGTCAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGC
ACCAGCGCGGCATGAGTAGGGGAGCTCCATTCCGGCATCTTCAGCAGAGT
CGAGGATGTAAGCATCGTCGGGGGCATCAAACTCGTTTTCCTCTCCATCT
GGTCCAATTAGTTTCACTTTGTAAACTGCCATTGCAGATACTTTGAATGA
AGAAGACTTNCAGCCAAAAGCTTTTGAAACACTCCTGGAAACCAAGGAAC
GGGGGCTCTTGAC
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