DN617304

Overview
NameDN617304
Unique NameDN617304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5707 contig Csv1_Contig5707:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_CAEBR (Probable signal peptidase complex subunit 3 OS=Caenorhabditis briggsae GN=CBG22979 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.814e-16
Identity = 49/150 (32.67%), Postives = 78/150 (52.00%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALMCAIASLSDNLNTPSPSAQIEILNINWFQKQPHGNDE-----VSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIP-AKEFAKFSIHTSNKYRFIDQG-HNLRGKEFNLTLHWHV 505
            MH+   RAN+LL F + ++A + A   LS      + S  +E+ +I     + +  D+      +L  N+  D   LF WN KQLF+++ AEY++ +NA+NQV +WD I+  A+      I    KY F+D G H L+       L ++V
Sbjct:    1 MHNLLSRANSLLAFTLWVMAAVTAACFLSTVFLDYTVSNHLEVNDIKIRNVRDYATDDKQADLATLAFNLKVDFSRLFNWNVKQLFVYLVAEYKSAENAVNQVVIWDRIVERAERVVMDEIGVKTKYYFLDDGAHLLKHDNVTFVLRYNV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_CAEEL (Probable signal peptidase complex subunit 3 OS=Caenorhabditis elegans GN=K12H4.4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.209e-15
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALMCAIASLSD-----NLNTPSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIP-AKEFAKFSIHTSNKYRFIDQGHN-LRGKEFNLTLHWHV 505
            MH+   RANALL F + ++A + A   LS       + T      +++ N+  +       D  +L  N+  D   +F WN KQLF+++ AEY++  N +NQV LWD I+  A       I   +KY F+D G N L  K     L ++V
Sbjct:    1 MHNLLSRANALLAFTLWVMAAVTAACFLSTVFLDYTVPTKLTVNDVKVRNVVDYATDEQQADLATLNFNLKVDFSKIFNWNVKQLFVYLVAEYKSKVNEVNQVVLWDRIVERADRVVMDEIGVKSKYYFLDDGTNLLNHKNVTFVLRYNV 150          
BLAST of DN617304 vs. ExPASy Swiss-Prot
Match: SPCS3_DROME (Signal peptidase complex subunit 3 OS=Drosophila melanogaster GN=Spase22-23 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.395e-15
Identity = 47/150 (31.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   77 MHSFGYRANALLTFAVTILALM---CAIASLSDNLNTPSPSAQIEIL--NINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYETPKNALNQVSLWDAIIPAKEFAKFSIHTSN-KYRFIDQGHNLR-GKEFNLTLHWHV 505
            MH+   R NA + + +++LA +   C ++++  +  T +    + +L  N+  +      +D   +T ++  +L  +F WN KQLF+++ AEY+TP N LNQV LWD II   + A       N KY F D G+ L+  +  +L L W++
Sbjct:    1 MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKNVPDYGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRGDNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNI 150          
The following BLAST results are available for this feature:
BLAST of DN617304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SPCS3_CAEBR5.814e-1632.67Probable signal peptidase complex subunit 3 OS=Cae... [more]
SPCS3_CAEEL2.209e-1532.67Probable signal peptidase complex subunit 3 OS=Cae... [more]
SPCS3_DROME8.395e-1531.33Signal peptidase complex subunit 3 OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617304 ID=DN617304; Name=DN617304; organism=Citrus sinensis; type=EST; length=507bp
CTTCTCTCTCAGACCAAAAATCAAACGACAGCAGCTGCAACAGCGGCAGG
GAACAAAAACAGGAAAAAAGAAAAAAATGCATTCGTTTGGGTACAGAGCC
AACGCTCTGCTGACGTTCGCCGTGACGATTCTGGCGCTAATGTGCGCCAT
CGCTTCTCTTTCTGATAACCTTAACACTCCCTCTCCCTCCGCTCAAATTG
AGATATTGAATATCAATTGGTTTCAGAAGCAGCCACATGGAAACGACGAG
GTCAGCCTGACATTGAATATAACAGCTGACTTGCAATCACTATTTACATG
GAACACAAAACAGCTTTTCATTTTTGTGGCAGCTGAGTATGAAACCCCAA
AGAATGCCTTAAACCAAGTGTCTCTTTGGGATGCTATAATACCTGCAAAA
GAGTTTGCTAAGTTTTCCATTCATACCTCGAACAAATATCGTTTCATTGA
TCAGGGACACAATCTTCGAGGTAAAGAATTCAACTTGACATTGCACTGGC
ACGTCAT
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