DN617298

Overview
NameDN617298
Unique NameDN617298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:1101..1793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.349e-36
Identity = 68/85 (80.00%), Postives = 79/85 (92.94%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIP+NV  +VC +PP+ L M++TFIGNSTSIQE+FRR+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ+A
Sbjct:  344 WIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIPNN++++ C +PP+GL ++STFIGNST+IQ  FRRV +QF+ MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct:  342 WIPNNIQTAHCSVPPKGLDVSSTFIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 426          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 67/85 (78.82%), Postives = 80/85 (94.12%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIPNNV+++ CDI PRGL M+ TFIGNST+IQ++F+R+++QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM DLV+EYQQYQ+A
Sbjct:  344 WIPNNVQTAHCDIAPRGLKMSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLVAEYQQYQEA 428          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.712e-36
Identity = 68/85 (80.00%), Postives = 79/85 (92.94%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIPNNV+++ C IPP G++ +STFIGNST+IQ++FRRV +QF+ MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA
Sbjct:  345 WIPNNVQTAHCSIPPVGMNASSTFIGNSTAIQDIFRRVGDQFSVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.272e-35
Identity = 68/87 (78.16%), Postives = 80/87 (91.95%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            WIPNN++++    PPRGL ++STF+GNST+IQE+FRRV EQF+AMFRR+AFLHWYT EGMDEMEFTEAESNMNDLVSEYQQYQDA+A
Sbjct:  346 WIPNNIQTACALSPPRGLKISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWYTSEGMDEMEFTEAESNMNDLVSEYQQYQDASA 432          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.662e-35
Identity = 66/86 (76.74%), Postives = 80/86 (93.02%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV+++VC + P+GL MA+TFI NSTSIQE+F+RV +QF+AMF+RKAFLHWYT EGMDE+EF+EAESNMNDLVSEYQQYQ+AT
Sbjct:  344 WIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 63/86 (73.26%), Postives = 81/86 (94.19%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV+++VCDIPPRG+ M++TFIGN+T+IQE+F+R+SEQF AMF RKAFLHWYTGEGM+E +F EA++N++DL+SEYQQYQDAT
Sbjct:  344 WIPNNVQTAVCDIPPRGMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDLLSEYQQYQDAT 429          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 66/85 (77.65%), Postives = 78/85 (91.76%), Query Frame = -3
Query:  440 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 694
            WIPNNV+++ CDI PR   M+ TFIGNST+IQ++F+RV++QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM DLV+EYQQYQ+A
Sbjct:  344 WIPNNVQTAHCDIAPRAHKMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLVAEYQQYQEA 428          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = -3
Query:  434 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATA 694
            WIPNNVK +VCDIPPRGLSMA+TFIGN+T+IQE+F RVSE F+AMF+RKAF+HWYT EGMD  EF EAE+N++DLVSEYQQ+QDA A
Sbjct:  344 WIPNNVKVAVCDIPPRGLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIHDLVSEYQQFQDAKA 430          
BLAST of DN617298 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = -3
Query:  437 WIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 694
            WIPNNV++++C +PP+ + M++TFI NSTSIQE+F+RV +QF+AMFRRKAFLHWYT EGMD  EF EAESNMNDLVSEYQQYQ+AT
Sbjct:  344 WIPNNVQTAICSVPPKDVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWYTNEGMDITEFAEAESNMNDLVSEYQQYQNAT 429          
The following BLAST results are available for this feature:
BLAST of DN617298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 258
Match NameE-valueIdentityDescription
TBB_SCHPO3.349e-3680.00Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBB1_COLGR4.373e-3678.82Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB_MELLI5.712e-3678.82Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB1_COLGL5.712e-3680.00Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB1_TRIVI1.272e-3578.16Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_YEAST1.662e-3576.74Tubulin beta chain OS=Saccharomyces cerevisiae GN=... [more]
TBB_BOMMO8.248e-3573.26Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]
TBB_UROFA1.407e-3477.65Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB1_HUMAN1.837e-3477.01Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBB1_GEOCN9.119e-3473.26Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617298 ID=DN617298; Name=DN617298; organism=Citrus sinensis; type=EST; length=696bp
TTTTTTTTTCCAAGGAAAAGAAATAGCATATCACATTATGGCATAATAGA
CAGTAACATAATAACATCATCGACCACAGAACATAAGAAGACAATGGCTA
AGGATAATAGAATACAAAAATAGATCAAATCCAGAATAGATAGCAAGGTA
AAGGTAGCACACACTACTACTTTCAAAACATGCATCCATCCTTTAATTTC
TCCATCCTCAATAGTCGATCCTCATCGATCCCATCATCCATCACTCACTT
TACTGCTACTTGATGTAAAAAACTCGAGAAAGAAAAACTATAACACATCA
TAGATCATTTTTTGCAATCCCAAGCAAGGTTGACAAAACCAGCTACACAG
ACAAATATGCATCATACACAACTTCTTCAAATATGATGCTCCAATTCTCC
CTCTTCCTCATCTTCATACTCGCCTTCCTCATCGGCGGTGGCATCCTGGT
ACTGCTGGTACTCAGACACGAGGTCATTCATATTGCTCTCAGCTTCAGTG
AACTCCATTTCATCCATCCCTTCACCAGTGTACCAGTGAAGGAAAGCCTT
TCTCCTAAACATAGCTGTGAATTGCTCACTCACTCTTCGGAACATTTCTT
GGATGGATGTTGAGTTCCCGATGAAGGTGGATGCCATGGAGAGACCTCTG
GGAGGAATGTCACAAACACTGGACTTCACATTGTTTGGAATCCACT
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