DN617290

Overview
NameDN617290
Unique NameDN617290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7350 contig Csv1_Contig7350:71..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: TDX_ONCMY (Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 44/144 (30.56%), Postives = 70/144 (48.61%), Query Frame = 2 
Query:  224 SAKVSKGQAPPSFTLK----DQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR-------LPYTLLSDEGNKVRKEWGVPADFFGSLPGRQTYVLDKNEVVQLIYNN 622
            + K   G   P FT K    D + +++S+S ++GK VV +FYP D T  C  +  AF D+ E+F+K G EVIG S D    H A+    R       +   L++D    +  ++GV      + P    +++D   V++ I  N
Sbjct:    3 AGKARIGHLAPGFTAKAVMPDGQFKDISMSDYRGKYVVFFFYPLDFTFVCPTEIIAFSDAAEEFRKIGCEVIGASVDSHFCHLAWTNTPRKHGGLGAMKIPLVADTMRSISTDYGVFEGGMRASPTGGLFIIDDKGVLRQITIN 146
[Close]
BLAST of DN617290 vs. ExPASy Swiss-Prot
Match: TDXH_AQUAE (Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_858 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.770e-11
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 2 
Query:  242 GQAPPSFTLKDQEGRNVSLSKFKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDSSSHKAFAKKYR------LPYTLLSDEGNKVRKEWGV 538
            G+  P+F  +   G       FKG+ VV++ +PAD TP CT +  AF  +YE+FKK   ++IG+S D + SH A+    +      +P+ +++D   +V K++G+
Sbjct:   10 GEPAPAFEAQTTFGPVKFPDDFKGQWVVLFSHPADFTPVCTTEFVAFAKNYEEFKKRNVQLIGLSVDSNFSHIAWVMNIKEKFGIEIPFPIIADHNMEVAKKYGM 114
The following BLAST results are available for this feature:
BLAST of DN617290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TDX_ONCMY5.141e-1130.56Peroxiredoxin OS=Oncorhynchus mykiss PE=2 SV=1[more]
TDXH_AQUAE8.770e-1133.33Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617290 ID=DN617290; Name=DN617290; organism=Citrus sinensis; type=EST; length=624bp
TCATCAAGGAGCCTTATCTCTTCCACTCAAATGGGCTGCTTCACTGAATC
TCCCAAAGCACACTCTCCCACCTTTTCTCCCCACTCAAACTCCCAGAACC
CCACCTTCCCAAAGCCTCGCAATTCCCTCCAAATCATCATCACAGTCTCA
ATTTTATGGCCTCGGGTTCTCTTTTTCTTCCAACTTGCCAATCCCATCTT
CCACATCTTTCAAGACTTCCATTTCTGCCAAGGTGAGCAAAGGACAGGCG
CCTCCTTCCTTCACATTGAAAGATCAAGAGGGCAGGAATGTGAGCCTATC
CAAGTTTAAAGGGAAGCCCGTGGTTGTTTATTTTTACCCTGCTGATGAGA
CACCTGGCTGCACCAAACAGGCATGCGCTTTTAGGGATTCTTATGAGAAA
TTTAAGAAAGCAGGAGCTGAGGTTATTGGGATTAGTGGTGATGATTCATC
GTCACACAAGGCATTTGCAAAAAAGTATAGGCTTCCATATACATTGCTGA
GCGACGAGGGTAACAAGGTGAGGAAAGAATGGGGGGTTCCAGCAGACTTC
TTTGGATCATTGCCTGGGAGACAGACTTACGTTCTTGACAAGAATGAAGT
GGTTCAGCTCATCTACAACAACCA
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