DN617287

Overview
NameDN617287
Unique NameDN617287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4014 contig Csv1_Contig4014:187..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_SPIBA (Thioredoxin reductase (Fragment) OS=Spironucleus barkhanus GN=TRXB PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.532e-36
Identity = 84/201 (41.79%), Postives = 122/201 (60.70%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            I+G GP             L P++F G     I    QL TT++VEN+PGF + I G DL+    +Q+   G Q+F E V+K+D  +RPFK+    +++ +  D +I ATG+ A++L   G   FW +G+SACAVCD    + ++K   V+GGGD A EEA++L+   SKVY+I RRD+FRAS  M  R  +NPKI++I+N
Sbjct:    3 IVGGGPGGLAAAIYAGRAGLTPVIFLG-----IETSSQLMTTTEVENYPGF-KTIQGPDLVQNQVDQAEHCGAQLFYEDVTKIDATARPFKITHGYENEIMTCDALIFATGSTAQRLDVIGEKQFWQKGVSACAVCDSM--MAKNKDTVVVGGGDVACEEASYLSNIASKVYLILRRDAFRASAAMVQRVKSNPKIEIIYN 195          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_LISIN (Thioredoxin reductase OS=Listeria innocua GN=trxB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.342e-35
Identity = 84/202 (41.58%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIG+GP            +L  ++ E  +     PGGQ+  T++VEN+PGF   ILG DL D+  + + +FG +     + +V    + FK  T  SK+  A  +I+ATGA  +KL   G +    RG+S CAVCDGA   F+++ L V+GGGDSA+EE  +LT+Y  KV I+HRRD  RA +I+Q+RA  + K+D IWN
Sbjct:   10 VIIIGAGPAGMTAALYTSRADLDTLMIERGV-----PGGQMVNTAEVENYPGF-DSILGPDLSDKMLSGAKQFGAEYAYGDIKEV-IDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGA--FFKNRELVVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWN 202          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_LISMO (Thioredoxin reductase OS=Listeria monocytogenes GN=trxB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.290e-35
Identity = 84/202 (41.58%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIG+GP            +L  ++ E  +     PGGQ+  T++VEN+PGF   ILG DL D+  + + +FG +     + +V    + FK  T  SK+  A  +I+ATGA  +KL   G +    RG+S CAVCDGA   F+++ L V+GGGDSA+EE  +LT+Y  KV I+HRRD  RA +I+Q+RA  + K+D IWN
Sbjct:   10 VIIIGAGPAGMTAALYTSRADLDTLMIERGV-----PGGQMVNTAEVENYPGF-DSILGPDLSDKMLSGAKQFGAEYAYGDIKEV-VDGKEFKTVTAGSKTYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGA--FFKNRELIVVGGGDSAVEEGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWN 202          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_BACSU (Thioredoxin reductase OS=Bacillus subtilis GN=trxB PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 84/202 (41.58%), Postives = 114/202 (56.44%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVF-TDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V IIG+GP             L  ++ E  +     PGGQ+  T DVEN+PGF + ILG +L ++    + +FG +     + +V    + +KV    SK   A  VI+A GA  KK+  PG      RG+S CAVCDGA   F+ K L V+GGGDSA+EE  +LT++ SKV I+HRRD  RA  I+Q RA  N K+D +WN
Sbjct:    9 VIIIGAGPAGMTAAVYTSRANLSTLMIERGI-----PGGQMANTEDVENYPGF-ESILGPELSNKMFEHAKKFGAEYAYGDIKEV-IDGKEYKVVKAGSKEYKARAVIIAAGAEYKKIGVPGEKELGGRGVSYCAVCDGA--FFKGKELVVVGGGDSAVEEGVYLTRFASKVTIVHRRDKLRAQSILQARAFDNEKVDFLWN 201          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 75/192 (39.06%), Postives = 115/192 (59.90%), Query Frame = 3
Query:  114 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRAL 689
            K+ I+GSGP             L P+L  G     I  GGQL  T+++EN+PG  + I G +LM+R    SL+F T+I  + +  V+FK +PF +  +      D VI+ATGA  + L     + F  +GIS CAVCDG    +++K +AV+GGG++A+EE  +L+ +  K+Y+IHRR++F+A KI+ +R L
Sbjct:    8 KIIILGSGPAGYTAAIYSSRANLNPLLITG-----INKGGQLMNTNEIENWPGDFKKITGPELMNRMHEHSLKFKTEIVYDNIISVEFKKKPFFLLGEYNKYTCDAVIIATGANPRYLGLSSENKFKGKGISTCAVCDGF--FYKNKEIAVVGGGNTAIEETLYLSNFVKKIYLIHRRNNFKAEKILIDRLL 192          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_COXBU (Thioredoxin reductase OS=Coxiella burnetii GN=trxB PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 76/202 (37.62%), Postives = 116/202 (57.43%), Query Frame = 3
Query:  123 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN---RALTNPKIDVIWN 719
            I+GSGP             LKPI+  G     +  GGQL TT+DV+N+PG   G+ G  LM+R +  + R  TQ   + +++ D   RPF +  D+ +   D +I+ATGA A+ L  P   A+  +G+SACA CDG    +R K +AV+GGG++A+EEA +L+   S V +IHRRD  RA K++     + +   K+ ++W+
Sbjct:   11 ILGSGPAGYTAAIYAARANLKPIMITG-----MEQGGQLMTTTDVDNWPGEAPGLQGPQLMERMQKHAERLDTQFIFDHINEADLNQRPFLLKGDNATYSCDALIIATGASARYLGLPSEKAYMGKGVSACATCDGF--FYRGKKVAVVGGGNTAVEEALYLSHIASHVTLIHRRDKLRAEKMLSAQLIKKVEEGKVAIVWS 205          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_BORBU (Thioredoxin reductase OS=Borrelia burgdorferi GN=trxB PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 78/202 (38.61%), Postives = 118/202 (58.42%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ-FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            V I+GSGP              K  + EG       PGGQLTTT++V N+PGF  GI G +LM   R Q +  G + F ETV  +  K   F ++T++    +  VI+A G+  KKL+    S  FWN+GIS CA+CDG   +F+ K +AVIGGG++A+ E+ +L+K   KVY+I R+++ RA  ++++     P I++++N
Sbjct:   28 VIIVGSGPAGLTAGIYSVMSNYKAAILEG-----PEPGGQLTTTTEVYNYPGFKNGISGRNLMLNMREQVVNLGAKTFPETVFSIKRKGNIFYLYTENYIYKSKAVIIAVGSKPKKLETLKNSGLFWNKGISVCAICDG--HLFKGKRVAVIGGGNTALSESIYLSKLVDKVYLIVRKNNLRAIAMLRDSVAKLPNIEILYN 222          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_BUCBP (Thioredoxin reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 76/201 (37.81%), Postives = 119/201 (59.20%), Query Frame = 3
Query:  114 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI 713
            K+ I+GSGP             L+P+LF G   N+   GGQL  T+++EN+PG  + + G +LM+R  N +    T+I    + +V+F   PF + +D+     +D+VI+ATGA  K L       F  +G+S CAVCDG    ++++ +AV+GGG++A+EEA +L+    KVY+IHRR +F A KI+ +R L   K ++I
Sbjct:   12 KLIILGSGPAGYTAAIYSARANLEPLLFTG---NN--KGGQLINTNEIENWPGDSKSLTGLELMERMHNHAKSLNTKIIPNEIIRVNFFKIPFLLVSDTNQYYTSDSVIIATGASPKYLGLTSESKFIGKGVSVCAVCDGF--FYKNEDVAVVGGGNTALEEALYLSNIARKVYLIHRRKTFSAEKILISRMLNKTKKNII 205          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_EUBAC (Thioredoxin reductase OS=Eubacterium acidaminophilum GN=trxB PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.469e-31
Identity = 73/201 (36.32%), Postives = 107/201 (53.23%), Query Frame = 3
Query:  117 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN 719
            + IIGSGP            ++K I+ EG        GGQ+  T +V N+PG  +   G  L++R   Q+  FG +   + +  VD   +   +  +     A +VI+ATGA  +    PG      +G+S CA CD  A  F D  + V+GGGD+A+EEA +L K+  KV I+HRRD  RA+K +Q +A  NPK+D +WN
Sbjct:    7 LAIIGSGPAGLAAALYGARAKMKTIMIEGQKV-----GGQIVITHEVANYPGSVREATGPSLIERMEEQANEFGAEKVMDKIVDVDLDGKIKVIKGEKAEYKAKSVILATGAAPRLAGCPGEQELTGKGVSYCATCD--ADFFEDMEVFVVGGGDTAVEEAMYLAKFARKVTIVHRRDELRAAKSIQEKAFKNPKLDFMWN 200          
BLAST of DN617287 vs. ExPASy Swiss-Prot
Match: TRXB_BUCAI (Thioredoxin reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.622e-31
Identity = 73/199 (36.68%), Postives = 115/199 (57.79%), Query Frame = 3
Query:   87 MDEIQTLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNR 683
            MD+++   +K+ I+GSGP             L P L  G        GGQL  T+++EN+PG    I G +LM+R    ++   T++  +TV  V+FK  PF +  ++    AD+VI+ATGA  + L       F  +G+S CAVCDG    +++K +AV+GGG++A+EE  +L+ +  KV++IHR  +FRA KI+ +R
Sbjct:    1 MDKVK--HSKIIILGSGPAGYTAAIYAARANLDPFLITG-----TNKGGQLMNTNEIENWPGDYNKISGSELMNRMYKHAIELKTKVICDTVISVNFKKNPFFLIGENNKYTADSVIIATGANPRYLGLQSESLFKGKGVSTCAVCDGF--FYKNKEVAVVGGGNTAIEETLYLSNFVKKVHLIHRGINFRAEKILLDR 190          
The following BLAST results are available for this feature:
BLAST of DN617287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXB_SPIBA3.532e-3641.79Thioredoxin reductase (Fragment) OS=Spironucleus b... [more]
TRXB_LISIN1.342e-3541.58Thioredoxin reductase OS=Listeria innocua GN=trxB ... [more]
TRXB_LISMO2.290e-3541.58Thioredoxin reductase OS=Listeria monocytogenes GN... [more]
TRXB_BACSU1.136e-3441.58Thioredoxin reductase OS=Bacillus subtilis GN=trxB... [more]
TRXB_BUCAP9.620e-3439.06Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_COXBU1.641e-3337.62Thioredoxin reductase OS=Coxiella burnetii GN=trxB... [more]
TRXB_BORBU2.799e-3338.61Thioredoxin reductase OS=Borrelia burgdorferi GN=t... [more]
TRXB_BUCBP1.176e-3137.81Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]
TRXB_EUBAC4.469e-3136.32Thioredoxin reductase OS=Eubacterium acidaminophil... [more]
TRXB_BUCAI7.622e-3136.68Thioredoxin reductase OS=Buchnera aphidicola subsp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617287 ID=DN617287; Name=DN617287; organism=Citrus sinensis; type=EST; length=720bp
GAACCTTTTTTGGAATTGTAACTACTTCCTCCGCCGCGGCCGCCGCTTCT
TTTTCCGCAACCACCGCTCCCAAGATCAGCAACGCCATGGACGAAATACA
AACCCTCAAGACCAAAGTCTGCATCATTGGCAGCGGCCCCGCCGCCCACA
CTGCCGCCATCTATGCCGCCCGAGCCGAGCTCAAACCCATTCTCTTCGAG
GGCTGGATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTC
CGACGTCGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACT
TGATGGATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTT
ACCGAGACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTT
TACAGATTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCG
CCGTTGCCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGT
GGCATATCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGA
CAAACCCTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCA
ACTTTTTGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGAT
AGTTTTAGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAA
GATTGATGTGATTTGGAATT
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