DN617282

Overview
NameDN617282
Unique NameDN617282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7791 contig Csv1_Contig7791:171..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.579e-32
Identity = 62/95 (65.26%), Postives = 79/95 (83.16%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            G+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIK+V KK+
Sbjct:  335 GEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.981e-32
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  KD
Sbjct:  300 GQISNGYTPVLDCHTAHIACKFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKD 394          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.981e-32
Identity = 62/95 (65.26%), Postives = 78/95 (82.11%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK V  K+
Sbjct:  351 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKE 445          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.020e-31
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = -3
Query:  288 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEK-EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 560
            GQI  GY PVLDCHTSHIA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV+K V
Sbjct:  337 GQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.063e-31
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = -3
Query:  276 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 560
            G+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+I  +++K+
Sbjct:  337 GEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = -3
Query:  273 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPK---FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 560
            GQI  GY+PVLDCHT+HIA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIK+  KK P
Sbjct:  339 GQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.352e-28
Identity = 54/85 (63.53%), Postives = 73/85 (85.88%), Query Frame = -3
Query:  291 GYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKN 545
            GY PV+DCHT+HIA KF ++++++D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+IK+
Sbjct:  345 GYCPVVDCHTAHIACKFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.352e-28
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = -3
Query:  279 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 560
            G I  GY+PV+DCHT+HI  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAVGV+K+VE K
Sbjct:  354 GFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.904e-26
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = -3
Query:  279 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 560
            G I  GY PVLD HT+H+A KF  L++K + R+GK +E+ PKFLKNG++G+V+++PTKP+ VE FS Y  LGRF +RDM++TVAVGVI+ V  K
Sbjct:  336 GHIKAGYQPVLDIHTAHVATKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHK 429          
BLAST of DN617282 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = -3
Query:  330 GQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 560
            GQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  337 GQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of DN617282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
EF1A_CRYPV4.579e-3265.26Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_RHYAM5.981e-3267.37Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_BOMMO5.981e-3265.26Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_ENTHI1.020e-3168.48Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_PLAFK5.063e-3161.05Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_DICDI8.637e-3165.66Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_BLAHO2.352e-2863.53Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A1_XENLA2.352e-2861.70Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A2_EUPCR4.904e-2657.45Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_SPOFR9.249e-2562.34Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01A01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617282 ID=DN617282; Name=DN617282; organism=Citrus sinensis; type=EST; length=583bp
ATATATCGAGCACCGACTAAATTTTCAAAATCGAGCACTAACGGCTAATC
TTGAAACAAAATGTTTGACATCCAAAAACTGGTTTATCAACTTACCAAAA
AAAAACTCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTA
AAACAAACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCT
AACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAG
ACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATC
ACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAG
AGGTGGGTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCA
TCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCA
AGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTT
GACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTC
CAATCTGGCCCAGGGTGGTTCATGATGATGACC
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