CX044414

Overview
NameCX044414
Unique NameCX044414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_PROM2 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.039e-32
Identity = 68/158 (43.04%), Postives = 104/158 (65.82%), Query Frame = -2
Query:  356 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEE 829
            ++  L +E    + + +RISADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q++ ++E  + ++ SYQ +YKQLVE+L   GV P+  VG  FDP LHEA++RE S E DE  IIEE ++G+ L  ++LR ++VKVS GPG    ++E
Sbjct:   62 RLKQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQIVSKTLTAILPIVDNFERARQQLQPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLREPSEESDEDFIIEELQRGYHLEGKVLRHALVKVSMGPGKQNSQQE 219          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SYNJA (Protein grpE OS=Synechococcus sp. (strain JA-3-3Ab) GN=grpE PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.770e-32
Identity = 63/155 (40.65%), Postives = 108/155 (69.68%), Query Frame = -2
Query:  347 EELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPS 811
            ++L  +    +R+ ADF+N+R+RT++E+       + + +  +L V+D+FERA+ Q+K++T+ E +++NSYQS+Y+ LVE L  +GV  +++VG PFDP LHEAI R+ S+E+ E V+  E++ G+KLGD ++R +MV VS+G   ++P    P+
Sbjct:   64 QQLKEKEESYIRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQLKLETDREREVHNSYQSVYRLLVECLKKMGVSRMKSVGQPFDPNLHEAIARQPSSEYPEDVVAVEYQPGYKLGDLVIRHAMVAVSSGSPTSEPSPSDPA 218          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_PROM5 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9515) GN=grpE PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.842e-32
Identity = 66/162 (40.74%), Postives = 106/162 (65.43%), Query Frame = -2
Query:  344 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSE 829
            ++  L +E    +++ +RI+ADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K + +  + ++ SYQ +YKQLVE+L   GV P+  VG  FDP LHEA++RE S E +E +IIEE ++G+ L  ++LR ++VKVS GPG    +E +  +
Sbjct:   62 RLEQLEKEHETLKSQYVRIAADFDNFRKRQSRDQDDLKIQLVSKALTAILPIVDNFERARQQLKPEGDEAQTLHRSYQGLYKQLVEVLKQQGVAPMRVVGQQFDPNLHEAVLREPSEEQNEDIIIEELQRGYHLEGKVLRHALVKVSMGPGQQISQESEEKD 223          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_PROMA (Protein grpE OS=Prochlorococcus marinus GN=grpE PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.970e-31
Identity = 69/159 (43.40%), Postives = 102/159 (64.15%), Query Frame = -2
Query:  353 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQ 829
            ++  L +E    R++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ QI  + E    I+ +YQ++YKQLV++L  LGV P+  VG  FDP LHEA++RE S    E +I+EE  +G+ L  R+LR + VKVS GPGP   +E++
Sbjct:   62 RLEQLEKEHETLRSQYVRIAADFDNFRKRQSRDQDDLKLQLTCNTLSEILPVVDNFERARQQINPEGEEALTIHRNYQNLYKQLVDVLKKLGVAPMRVVGQSFDPTLHEALLREPSELMVEDMILEELVRGYHLNGRVLRHAQVKVSMGPGPKVDEEDK 220          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SYNJB (Protein grpE OS=Synechococcus sp. GN=grpE PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.731e-31
Identity = 65/159 (40.88%), Postives = 108/159 (67.92%), Query Frame = -2
Query:  335 EELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGPAKPKEEQPSEGEA 811
            ++L  +    LR+ ADF+N+R+RT++E+       + + +  +L V+D+FERA+ Q+K++T+ E +++NSYQS+Y+ LVE L  +GV  +++VG PFDP LHEAI R+ S ++ E V+  E++ G+KLGD ++R +MV VSAG   ++P     +  EA
Sbjct:   64 QQLKEKEDAYLRLYADFENYRRRTQREKEEFSQKERQKFVLEILPVVDSFERAQQQLKLETDRERELHNSYQSVYRLLVECLKKMGVSRMKSVGQPFDPNLHEAIARQPSPDYPEDVVAVEYQPGYKLGDLVIRHAMVAVSAGSPSSEPSPPAQATIEA 222          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_GLOVI (Protein grpE OS=Gloeobacter violaceus GN=grpE PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.668e-30
Identity = 60/144 (41.67%), Postives = 97/144 (67.36%), Query Frame = -2
Query:  389 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 820
            +L ++L+    +  R+ ADFDNFRKRT++E+  L      ++++ +L V DNF+RA+   +   E EEK++NSYQ +Y+Q + +L  +GV  +E +G PFDP  HEAI+RE+S    +  ++ E +KG+ L D++LRP+MVKV+
Sbjct:   47 DLQKKLADYEQKYTRLMADFDNFRKRTQREKDELAYFVSAKLLKDILPVFDNFDRARAFAQPDNEREEKLHNSYQQVYRQFLSVLEKMGVTAMEAIGQPFDPAQHEAILREESAGVSQETVVAELQKGYLLADKVLRPAMVKVA 190          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_GEOTN (Protein grpE OS=Geobacillus thermodenitrificans (strain NG80-2) GN=grpE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            +V  L E+L+    R LR+ ADF+NFR+R  +E  +        +   LL VLDNFERA   +K++TE E+   I    + +Y+ L++ L   GV  +E VG PFDP LH+A+M+ D   ++   ++EE +KG+KL DR+LRP+MVKVS
Sbjct:   74 QVAELEEKLAEMEKRYLRLYADFENFRRRARQEMEAAEKYRAQSLASDLLPVLDNFERA---LKIETENEQAKSILQGVEMVYRSLLDALRKEGVEVIEAVGKPFDPHLHQAVMQTDEGGYEPNTVVEELQKGYKLKDRILRPAMVKVS 219          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_GEOKA (Protein grpE OS=Geobacillus kaustophilus GN=grpE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 62/149 (41.61%), Postives = 94/149 (63.09%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE--KINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            ++  L  +LS    R LR+ ADF+NFR+RT +E  +        +   LL VLDNFERA   +K++T+ E+   I    + +Y+ LV+ L   GV  +E VG PFDP LH+A+M+ ++  ++   ++EE +KG+KL DR+LRP+MVKVS
Sbjct:   67 QIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA---LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPAMVKVS 212          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_BACP2 (Protein grpE OS=Bacillus pumilus (strain SAFR-032) GN=grpE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 61/147 (41.50%), Postives = 91/147 (61.90%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L + L  +  +ILR+ ADF+N+++R   E  ++       V+  LL  LDNFERA   I    E  + +    Q +Y+QLVE L + GV P+E VG  FDP LH+A+M+ +   FD  +++EE +KG+KL DR++RPSMVKV+
Sbjct:   39 KIDELQQLLDEKENKILRVQADFENYKRRARTEVETVQKYRSQHVVSDLLPALDNFERA-LGIDPDNEQAKSLLEGMQMVYRQLVEALKNEGVEPIEAVGKEFDPNLHQAVMQVEDENFDSNIVVEELQKGYKLKDRVIRPSMVKVN 184          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_ANOFW (Protein grpE OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=grpE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 57/147 (38.78%), Postives = 93/147 (63.27%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L  +L+    R LR+ ADFDN+R+R   +  +        ++  LL +LDNFERA  Q++V+ E  + +    + +Y+ L+E L   GV  +E+VG PFDP +H+A+M+ D   ++   ++EEF+KG+KL DR++RP+MVKV+
Sbjct:   57 KIAQLEAKLAETENRFLRLHADFDNYRRRVRLDMEAAEKYRAQSLVSDLLPILDNFERA-LQVQVEDEKAKLLLQGMEMVYRSLIEALKKEGVEAIESVGKPFDPHVHQAVMQVDDQNYEPNTVVEEFQKGYKLKDRVIRPAMVKVN 202          
The following BLAST results are available for this feature:
BLAST of CX044414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
GRPE_PROM23.039e-3243.04Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_SYNJA6.770e-3240.65Protein grpE OS=Synechococcus sp. (strain JA-3-3Ab... [more]
GRPE_PROM58.842e-3240.74Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_PROMA1.970e-3143.40Protein grpE OS=Prochlorococcus marinus GN=grpE PE... [more]
GRPE_SYNJB5.731e-3140.88Protein grpE OS=Synechococcus sp. GN=grpE PE=3 SV=... [more]
GRPE_GLOVI1.668e-3041.67Protein grpE OS=Gloeobacter violaceus GN=grpE PE=3... [more]
GRPE_GEOTN2.492e-2642.28Protein grpE OS=Geobacillus thermodenitrificans (s... [more]
GRPE_GEOKA2.492e-2641.61Protein grpE OS=Geobacillus kaustophilus GN=grpE P... [more]
GRPE_BACP22.492e-2641.50Protein grpE OS=Bacillus pumilus (strain SAFR-032)... [more]
GRPE_ANOFW3.254e-2638.78Protein grpE OS=Anoxybacillus flavithermus (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_17D09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17D09-H17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044414 ID=CX044414; Name=CX044414; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTACCTATAAAAATTTCTCAATAAACTGTCAGGTAAAAATATAGCT
CAGGCAAAACATAGGTCCAGGAGCACAATAACACTACACAAAGGTTTGAC
AAAGAAAGGCTAAAATCAGCCAAATAAATGCTAATCCCTAGAGCCATTAT
GAATTCCTCTGTTGAAACAAGCAATAACAGTCTCAGTAATCACACCCCAT
GAGATTAAATCCTATAAGCAAAACTTTTAACATTATCATGGCTGTTGCTT
TTACAAAACTGAATCTAGGTATGTGTATCAAGAGGACTCCGCTTCAACTT
CTTCTGTGCTGCTATCTGCGGTTTCAACTACAGCTGCCTCTCCTTCTGAT
GGTTGTTCTTCTTTCGGTTTCGCAGGCCCTGGACCAGCCGATACCTTTAC
CATCGATGGACGTAGGAGCCTATCGCCAAGTTTGAACCCCTTGCGGAATT
CTTCAATAATCACACCTTCATCAAATTCTGTGGAATCCTCGCGCATAATT
GCTTCGTGAAGCAATGGATCAAAAGGATTCCCAACCGTCTCCACAGGAAC
AACACCAAGTGATCCTAGGATTTCCACTAATTGCTTATATATGCTCTGAT
AGCTGTTGTTTATTTTCTCCTCTCCCTCGGTCTGCACCTTAATTTGAGTT
TTAGCTCTCTCAAAATTATCCAAAACTTGCAACAATCTCTCCATGACTTC
TCCTTGAGCATTTGTTACCAGTGAAAGGCGTTCCTTCTCCGTTCTCTTAC
GAAAATTGTCAAAGTCAGCACTGATCCTAAGAATACGAGCCCTCTCAGCT
GACAATTCTTCAGACAAGTTAACAACTTTC
back to top