CX044414

Overview
NameCX044414
Unique NameCX044414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_BEII9 (Protein grpE OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 47/154 (30.52%), Postives = 70/154 (45.45%), Query Frame = -2
Query:  374 NLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERA----KTQIKVQTEGEEK-INNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGPGP 820
            NL  E +  + ++LR  AD +N R+R+EKE               +L   DN  RA      + K   +G  K      +   +  +  L   GV  +E +GN FDP LHEA+          G + +    G+ +G+R+LRP+ V VS G GP
Sbjct:   47 NLQLENAGLKDKVLRTYADMENLRRRSEKEVADAKLYGVTSFARDMLTFADNLHRAIESLPAEAKQAVDGPLKTFVEGIELTERDFLSRLAKYGVKKIEPLGNKFDPNLHEALFEIPDESVVSGTVKQVVEDGYVIGERVLRPAKVGVSRG-GP 199          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_ACHLI (Protein grpE OS=Acholeplasma laidlawii (strain PG-8A) GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN---SYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L  E+     + LR  A+ +NF+KR + E++     A       LL   + F +    I       E +NN    ++ I  Q   +L + GVV ++ +G  FD  +H AI +E + +   G ++E  + G+   DR+LRP+MVK++
Sbjct:   35 KIEFLEAEVKELNDKYLRTLAEAENFKKRIQAEKIMDRKYAASSFATELLVPYEQFSK----IVDFPSDNELLNNFLIGFKMIRDQFKSVLENEGVVEIKALGEVFDAKVHHAIEKESNKDKPNGTVLEVLQNGYLFKDRILRPAMVKIN 180          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_ACHLA (Protein grpE OS=Acholeplasma laidlawii GN=grpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN---SYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L  E+     + LR  A+ +NF+KR + E++     A       LL   + F +    I       E +NN    ++ I  Q   +L + GVV ++ +G  FD  +H AI +E + +   G ++E  + G+   DR+LRP+MVK++
Sbjct:   35 KIEFLEAEVKELNDKYLRTLAEAENFKKRIQAEKIMDRKYAASSFATELLVPYEQFSK----IVDFPSDNELLNNFLIGFKMIRDQFKSVLENEGVVEIKALGEVFDAKVHHAIEKESNKDKPNGTVLEVLQNGYLFKDRILRPAMVKIN 180          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_VIBF1 (Protein grpE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 43/154 (27.92%), Postives = 74/154 (48.05%), Query Frame = -2
Query:  389 KVVNLSEELSAERARI-------LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L   L A +A++       LR  A+  N R+R E++       A  +    LL VLDN ERA      + E  + +    +   +  V  +   G+  +  +G  F+P LH+AI  + S + +   ++   +KG+ L D++LRP+MV V+
Sbjct:   40 KIAELEAALLASQAQVKEQQDTVLRAKAEEQNVRRRAEEDVDKARKYALKKFAGELLPVLDNLERALESGDKENEAAKALLEGVELTLQTFVSTVEKFGLTVINPMGEAFNPELHQAIGMQASPDHESNTVMIVMQKGYTLNDQVLRPAMVMVA 193          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_FRATM (Protein grpE OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 47/151 (31.13%), Postives = 79/151 (52.32%), Query Frame = -2
Query:  392 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMER----LLQVLDNFERAKTQIKVQTEGEEKI--NNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKV 826
            +  L +     +   LR  A+ +N RKR E++    V+NA+   +E+    LL V+D+  +A   +K + + EE I      +   K LV+IL   GV  ++  G  FDP LHEA+    + EF++  I + F+KG+ L  R++R + V +
Sbjct:   49 IKELEDSCDQFKDEALRAKAEMENIRKRAERD----VSNARKFGIEKFAKELLPVIDSIGQA---LKHEVKHEEAIAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRIVRAAKVVI 192          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_FRAP2 (Protein grpE OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = -2
Query:  392 VVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMER----LLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKV 826
            +  L E   + +   LR  A+ +N RKR E++    V+NA+   +E+    LL V+D+ E+A    +V+ E    +    +   K LV+ L   G+  ++  G  FDP LHEA+    ++EF++  I + F+KG+ L  R++R + V +
Sbjct:   45 IKELEETCDSFKDEALRARAEMENVRKRAERD----VSNARKFGIEKFAKELLPVIDSIEQALKH-EVKLEEAIAMKEGIELTSKMLVDTLKKNGLEELDPKGEKFDPNLHEAMAMIPNSEFEDNTIFDVFQKGYMLNGRVVRAAKVVI 188          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_COLP3 (Protein grpE OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=grpE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 42/140 (30.00%), Postives = 69/140 (49.29%), Query Frame = -2
Query:  389 ERARILRISADFDNFRKRT----EKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 796
            ++  ++R  A+ DN R+R     EK R   +    GE    +L  +DN ERA   I  + E  + +    +   + L+  L   GV  V+    PF+P LH+A+  ++        +I   +KG++L  RL+RP+MV VS
Sbjct:   64 QKDSVIRAKAEVDNIRRRAAQDVEKARKFALEKFAGE----MLTSVDNLERALQNIDKEDESNKGVIEGVELTLQGLITSLDKFGVKAVDPQDQPFNPELHQAMSMQEVPGVAPNTVIAVMQKGYELNGRLIRPAMVMVS 199          
The following BLAST results are available for this feature:
BLAST of CX044414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
GRPE_BEII96.588e-1130.52Protein grpE OS=Beijerinckia indica subsp. indica ... [more]
GRPE_ACHLI6.588e-1128.67Protein grpE OS=Acholeplasma laidlawii (strain PG-... [more]
GRPE_ACHLA6.588e-1128.67Protein grpE OS=Acholeplasma laidlawii GN=grpE PE=... [more]
GRPE_VIBF18.604e-1127.92Protein grpE OS=Vibrio fischeri (strain ATCC 70060... [more]
GRPE_FRATM8.604e-1131.13Protein grpE OS=Francisella tularensis subsp. medi... [more]
GRPE_FRAP28.604e-1130.20Protein grpE OS=Francisella philomiragia subsp. ph... [more]
GRPE_COLP38.604e-1130.00Protein grpE OS=Colwellia psychrerythraea (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_17D09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17D09-H17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044414 ID=CX044414; Name=CX044414; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTACCTATAAAAATTTCTCAATAAACTGTCAGGTAAAAATATAGCT
CAGGCAAAACATAGGTCCAGGAGCACAATAACACTACACAAAGGTTTGAC
AAAGAAAGGCTAAAATCAGCCAAATAAATGCTAATCCCTAGAGCCATTAT
GAATTCCTCTGTTGAAACAAGCAATAACAGTCTCAGTAATCACACCCCAT
GAGATTAAATCCTATAAGCAAAACTTTTAACATTATCATGGCTGTTGCTT
TTACAAAACTGAATCTAGGTATGTGTATCAAGAGGACTCCGCTTCAACTT
CTTCTGTGCTGCTATCTGCGGTTTCAACTACAGCTGCCTCTCCTTCTGAT
GGTTGTTCTTCTTTCGGTTTCGCAGGCCCTGGACCAGCCGATACCTTTAC
CATCGATGGACGTAGGAGCCTATCGCCAAGTTTGAACCCCTTGCGGAATT
CTTCAATAATCACACCTTCATCAAATTCTGTGGAATCCTCGCGCATAATT
GCTTCGTGAAGCAATGGATCAAAAGGATTCCCAACCGTCTCCACAGGAAC
AACACCAAGTGATCCTAGGATTTCCACTAATTGCTTATATATGCTCTGAT
AGCTGTTGTTTATTTTCTCCTCTCCCTCGGTCTGCACCTTAATTTGAGTT
TTAGCTCTCTCAAAATTATCCAAAACTTGCAACAATCTCTCCATGACTTC
TCCTTGAGCATTTGTTACCAGTGAAAGGCGTTCCTTCTCCGTTCTCTTAC
GAAAATTGTCAAAGTCAGCACTGATCCTAAGAATACGAGCCCTCTCAGCT
GACAATTCTTCAGACAAGTTAACAACTTTC
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