CX044414

Overview
NameCX044414
Unique NameCX044414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_SORC5 (Protein grpE OS=Sorangium cellulosum (strain So ce56) GN=grpE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22
Identity = 60/157 (38.22%), Postives = 89/157 (56.69%), Query Frame = -2
Query:  371 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAG----PGPA 829
            K+     E +  R ++LR +ADFDNFRKR+ +E        +  +++ LL V DN ERA +  +   + +  +    + + KQ V+ L  +G+  +  VG PFDP +HEAI + DSTE   GV+I E + G+ LGD L+R +MV VS G    P PA
Sbjct:   37 KLGEAQAEAARMREQLLRTAADFDNFRKRSRREVEEAQRRGREAILKDLLPVFDNLERAASHAESAPDAKS-VAEGVRIVTKQFVDTLDRMGIKRIAAVGKPFDPSVHEAIQQLDSTEHPAGVVIAEVQPGYMLGDYLIRAAMVVVSKGSPVEPAPA 192          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_BACSU (Protein grpE OS=Bacillus subtilis GN=grpE PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 51/139 (36.69%), Postives = 86/139 (61.87%), Query Frame = -2
Query:  389 LSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 805
            L  +  ++LR+ ADF+N+++R+  E  +        ++  LL  LD+FERA  Q++   E  + +    + +++QLVE L   GV  +E VG  FDP LH+A+M+ +   +   +++EE +KG+KL DR++RPSMVKV+
Sbjct:   49 LEEKENKLLRVQADFENYKRRSRLEMEASQKYRSQNIVTDLLPALDSFERA-LQVEADNEQTKSLLQGMEMVHRQLVEALKKEGVEAIEAVGQEFDPNLHQAVMQAEDENYGSNIVVEEMQKGYKLKDRVIRPSMVKVN 186          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_STACT (Protein grpE OS=Staphylococcus carnosus (strain TM300) GN=grpE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.724e-22
Identity = 51/147 (34.69%), Postives = 89/147 (60.54%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            ++  L EE++ +  + LR+ A+F+N+++R + E  +L T     V+  +L  +DN ERA  QI+ + E  + +    Q +Y+ L+  L   G+  +E VG  FDP  H+A+M+++   F+   + +E + G+KL DR+LRPSMVKV+
Sbjct:   52 EIQQLKEEVNEQEEKYLRLYAEFENYKRRIQNENQTLKTYQAQCVLTDILPTIDNIERA-LQIEGEDESFKSLQKGVQMVYESLLRALEENGLEKIEAVGQQFDPNFHQAVMQDEDDSFESNAVTQELQTGYKLKDRVLRPSMVKVN 197          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_BACSK (Protein grpE OS=Bacillus clausii (strain KSM-K16) GN=grpE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 55/143 (38.46%), Postives = 90/143 (62.94%), Query Frame = -2
Query:  389 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 817
            L  EL+  + R+ R+ AD++NFR+RT++E+ +         +E+LL  LDNFERA   ++ + E  +++    + +Y+Q+ E L   GV P+ T G  FDP LH+A+M+     ++   I+EE +KG+KL DR++R SMVKV+
Sbjct:   50 LEIELNELKDRLARVRADYENFRRRTKEEKEAQAKYRAQGFIEKLLPALDNFERALL-VEPKHEEAKQLLQGMEMVYRQVEEALKQEGVEPIPTEGELFDPHLHQAVMQVSEEGYEPNQIVEELQKGYKLKDRVIRHSMVKVN 191          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_PELPD (Protein grpE OS=Pelobacter propionicus (strain DSM 2379) GN=grpE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = -2
Query:  380 KVVNLSEELSAERA-------RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVSAGP 829
            ++  L E+L+A+ A       R +R  AD +NFRKR+ +E+  L+      ++E +L V+DN ERA +       G   +    Q I+  L+  +   GV P+ET G PFDP  H+A+ +  + E     ++EEF+KG+ L +RLLRP+MV V+  P
Sbjct:   35 RISRLEEQLAAKEAECRENWDRFVRERADLENFRKRSNREKEELLNYGTKSLLEEILPVVDNLERALSH--ANENGSTGLTEGVQMIHGLLLNAMKKFGVTPLETSGAPFDPSFHQAMTQIPTDEHPPNTVVEEFQKGYLLKERLLRPAMVSVATAP 189          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_BACLD (Protein grpE OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=grpE PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 50/143 (34.97%), Postives = 87/143 (60.84%), Query Frame = -2
Query:  389 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 817
            L E L  +  ++LR+ ADF+N+++R   +  +        ++  LL  LDNFERA  QI    E  + +    + +++Q++E L + GV  + +VG  FDP +H+A+M+ +   ++   ++EE +KG+KL DR++RPSMVKV+
Sbjct:   52 LQERLEEKENKLLRVQADFENYKRRARLDLEAAEKYRSQRIISDLLPALDNFERA-LQIDPDNEQTKSLLQGMEMVHRQILEALKNEGVEQIPSVGEQFDPNMHQAVMQVEDEAYESNAVVEELQKGYKLKDRVIRPSMVKVN 193          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_CLOAB (Protein grpE OS=Clostridium acetobutylicum GN=grpE PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.415e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = -2
Query:  389 LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 817
            L  EL A + R+LR+SA+++N+R RT KE+  + T+A  +V+  +L  LDN ERA       TEG  E I    + + KQ    L  LG+  + + G  FDP LH A+M  +   + E  ++E  +KG+K GD++LR SMVKV+
Sbjct:   62 LKNELDAAKDRLLRLSAEYENYRNRTAKEKEGIYTDACSDVINEMLPTLDNLERA-----ASTEGSAEDIKKGVEMVVKQFKNSLSKLGIEEIPSEGK-FDPNLHNAVMHIEDEGYGENEVVEVLQKGYKRGDKVLRHSMVKVA 199          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_STAS1 (Protein grpE OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=grpE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.022e-21
Identity = 47/147 (31.97%), Postives = 92/147 (62.59%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            ++  L +++     + LR+ A+F+N+++R +KE  ++      +V+  +L  +DN ERA  QI  + E  + +    + +++ L+  L + G+  +ET G  FDP +H+A++++D+ +F+ G I +E + G+KL +R+LRPSMVKV+
Sbjct:   57 EIQQLKKDVQENEEKYLRLYAEFENYKRRIQKENQTMKAYKAQDVLNDILPTIDNIERA-LQIDGEDEQFKSLKKGVEMVHESLLNALKNNGLEKIETEGQQFDPNVHQAVVQDDNPDFESGQITQELQSGYKLKERVLRPSMVKVN 202          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_STAAW (Protein grpE OS=Staphylococcus aureus (strain MW2) GN=grpE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 51/147 (34.69%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L +       + LR+ A+F+N+++R +KE     T     V+  +L  +DN ERA  QI+   E  + +    Q +++ L+  L   G+  ++T G  FDP +H+A++++D+ +F+ G I +E +KG+KL DR+LRPSMVKV+
Sbjct:   62 KINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVN 207          
BLAST of CX044414 vs. ExPASy Swiss-Prot
Match: GRPE_STAAU (Protein grpE OS=Staphylococcus aureus GN=grpE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 51/147 (34.69%), Postives = 88/147 (59.86%), Query Frame = -2
Query:  389 KVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINNSYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLGDRLLRPSMVKVS 829
            K+  L +       + LR+ A+F+N+++R +KE     T     V+  +L  +DN ERA  QI+   E  + +    Q +++ L+  L   G+  ++T G  FDP +H+A++++D+ +F+ G I +E +KG+KL DR+LRPSMVKV+
Sbjct:   62 KINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERA-LQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVN 207          
The following BLAST results are available for this feature:
BLAST of CX044414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 357
Match NameE-valueIdentityDescription
GRPE_SORC51.671e-2238.22Protein grpE OS=Sorangium cellulosum (strain So ce... [more]
GRPE_BACSU2.183e-2236.69Protein grpE OS=Bacillus subtilis GN=grpE PE=1 SV=... [more]
GRPE_STACT3.724e-2234.69Protein grpE OS=Staphylococcus carnosus (strain TM... [more]
GRPE_BACSK6.351e-2238.46Protein grpE OS=Bacillus clausii (strain KSM-K16) ... [more]
GRPE_PELPD8.295e-2235.67Protein grpE OS=Pelobacter propionicus (strain DSM... [more]
GRPE_BACLD8.295e-2234.97Protein grpE OS=Bacillus licheniformis (strain DSM... [more]
GRPE_CLOAB1.415e-2139.58Protein grpE OS=Clostridium acetobutylicum GN=grpE... [more]
GRPE_STAS17.022e-2131.97Protein grpE OS=Staphylococcus saprophyticus subsp... [more]
GRPE_STAAW9.171e-2134.69Protein grpE OS=Staphylococcus aureus (strain MW2)... [more]
GRPE_STAAU9.171e-2134.69Protein grpE OS=Staphylococcus aureus GN=grpE PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_17D09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-17D09-H17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044414 ID=CX044414; Name=CX044414; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTACCTATAAAAATTTCTCAATAAACTGTCAGGTAAAAATATAGCT
CAGGCAAAACATAGGTCCAGGAGCACAATAACACTACACAAAGGTTTGAC
AAAGAAAGGCTAAAATCAGCCAAATAAATGCTAATCCCTAGAGCCATTAT
GAATTCCTCTGTTGAAACAAGCAATAACAGTCTCAGTAATCACACCCCAT
GAGATTAAATCCTATAAGCAAAACTTTTAACATTATCATGGCTGTTGCTT
TTACAAAACTGAATCTAGGTATGTGTATCAAGAGGACTCCGCTTCAACTT
CTTCTGTGCTGCTATCTGCGGTTTCAACTACAGCTGCCTCTCCTTCTGAT
GGTTGTTCTTCTTTCGGTTTCGCAGGCCCTGGACCAGCCGATACCTTTAC
CATCGATGGACGTAGGAGCCTATCGCCAAGTTTGAACCCCTTGCGGAATT
CTTCAATAATCACACCTTCATCAAATTCTGTGGAATCCTCGCGCATAATT
GCTTCGTGAAGCAATGGATCAAAAGGATTCCCAACCGTCTCCACAGGAAC
AACACCAAGTGATCCTAGGATTTCCACTAATTGCTTATATATGCTCTGAT
AGCTGTTGTTTATTTTCTCCTCTCCCTCGGTCTGCACCTTAATTTGAGTT
TTAGCTCTCTCAAAATTATCCAAAACTTGCAACAATCTCTCCATGACTTC
TCCTTGAGCATTTGTTACCAGTGAAAGGCGTTCCTTCTCCGTTCTCTTAC
GAAAATTGTCAAAGTCAGCACTGATCCTAAGAATACGAGCCCTCTCAGCT
GACAATTCTTCAGACAAGTTAACAACTTTC
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