CX044219

Overview
NameCX044219
Unique NameCX044219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.488e-28
Identity = 74/180 (41.11%), Postives = 90/180 (50.00%), Query Frame = -2
Query:  254 NVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 793
            N+L +RGPRRM+C +              P   E     L+  FR  + +                                +L+NK PRWHE LQCWCLNF GRVTVASVKNFQL+                  + + ++LQFGKV  ++FTMDYR PL AFQAFAI LSSF TKLACE
Sbjct:  226 NLLKSRGPRRMYCALEC------------PSTQETWENCLKTKFRKPTGNT-------------------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV------AAADPNDPASSKDEETVLLQFGKVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 356          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.756e-25
Identity = 62/112 (55.36%), Postives = 70/112 (62.50%), Query Frame = -2
Query:  260 DDEDGKL------RPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLA 577
            D +DGK         L+L +K P WHE LQCWCLNF GRV VASVKNFQLI                 P    ++LQFGK+  D+FTMDYR PL AFQAFAICLS+F TKLA
Sbjct:  267 DPQDGKRLSNSIPSSLVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLI----------APVEPGEPSDKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.418e-23
Identity = 75/182 (41.21%), Postives = 93/182 (51.10%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG RGPRRM  I   IP  + D    VP    + PR+  D       +K+L+  ++                         L NKPP W+E    + LNF+GRVT ASVKNFQ++                  + D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE
Sbjct:  410 ETNVLGFRGPRRMTVI---IPGMNSD-NERVP----IRPRNASDGLLVRWQNKTLESLIE-------------------------LHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 543          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 71/182 (39.01%), Postives = 92/182 (50.55%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG RGPRRM  I+  + A +  V         + PR+  D       +K+L+  ++                         L NKPP W++    + LNF+GRVT ASVKNFQ++                  + D I+LQFG+V +D FT+DYRYPL A QAFAI LSSFD KLACE
Sbjct:  409 ETNVLGFRGPRRMTVIIPGMSAENERV--------PIRPRNASDGLLVRWQNKTLESLIE-------------------------LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 542          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.016e-21
Identity = 67/182 (36.81%), Postives = 95/182 (52.20%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG +GPR+M  I   +P  ++     V  +  + PR+  ++  +   +K+ +  ++                         L+NK P W++  Q + LNF GRVT ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  373 ETNVLGFKGPRKMSVI---VPGMNM-----VHERVSIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 506          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 69/182 (37.91%), Postives = 96/182 (52.75%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG +GPR+M  I   IP  +++    +P +P    R+  +S  S   +KS+++ ++                         L NK P W++  Q + LNF GRVT ASVKNFQ++                  + D I++QFG+V  D+FT+DY YPL A QAFAI LSSFD+KLACE
Sbjct:  327 ETNVLGFKGPRKMSVI---IPGMNMN-HERIPFRP----RNEHESLLSKWQNKSMENLIE-------------------------LHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGN---------------DPDYIVMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE 460          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 69/182 (37.91%), Postives = 95/182 (52.20%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG +GPR+M  I   IP  +++    +P QP+    +  DS  S   ++++++ V+                         L NK P W+   Q + LNFRGRVT ASVKNFQ++                  + D I++QFG+V  D+FT+DY YPL A QAF I LSSFD+KLACE
Sbjct:  309 ETNVLGFKGPRKMSVI---IPGMTLN-HKQIPYQPQ----NNHDSLLSRWQNRTMENLVE-------------------------LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKN---------------DPDYIVMQFGRVADDVFTLDYNYPLCAVQAFGIGLSSFDSKLACE 442          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 67/182 (36.81%), Postives = 95/182 (52.20%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG +GPR+M  I   +P  ++     V  +  + PR+  ++  +   +K+ +  ++                         L+NK P W++  Q + LNF GRVT ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  372 ETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 67/182 (36.81%), Postives = 95/182 (52.20%), Query Frame = -2
Query:  254 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLACE 799
            E NVLG +GPR+M  I   +P  ++     V  +  + PR+  ++  +   +K+ +  ++                         L+NK P W++  Q + LNF GRVT ASVKNFQ+I                  + D I++QFG+V +D+FTMDY YPL A QAFAI LSSFD+KLACE
Sbjct:  372 ETNVLGFKGPRKMSVI---VPGMNM-----VHERVCIRPRNEHETLLARWQNKNTESIIE-------------------------LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGN---------------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 505          
BLAST of CX044219 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.916e-20
Identity = 66/180 (36.67%), Postives = 90/180 (50.00%), Query Frame = -2
Query:  260 ELNVLGTRGPRRMHCIMHSIPASSIDVGGSVPGQPELLPRSLEDSFRSISFSKSLDHSVDFSSARFSEIGALREDDEDGKLRPLILKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIXXXXXXXXXXXXXXXXXPEHDKIILQFGKVGKDMFTMDYRYPLFAFQAFAICLSSFDTKLA 799
            E NVLG RGPR+M  I+  + +           + ++ P++ +DS  S    K   H +                        L+L+NK P W ++   + LNF GRVT ASVKNFQ++                  E D ++LQFG+V  ++FTMD+RYPL   QAFAICLSSFD KLA
Sbjct:  429 ETNVLGFRGPRKMTVILPGMDSRK--------QRMKVQPQNDQDSILS-RVQKGAGHGL------------------------LLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPD---------------EPDHLVLQFGRVAPNIFTMDFRYPLCPLQAFAICLSSFDGKLA 560          
The following BLAST results are available for this feature:
BLAST of CX044219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP1_ORYSJ9.488e-2841.11Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP2_ORYSJ5.756e-2555.36Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TULP1_MOUSE2.418e-2341.21Tubby-related protein 1 OS=Mus musculus GN=Tulp1 P... [more]
TULP1_HUMAN4.125e-2339.01Tubby-related protein 1 OS=Homo sapiens GN=TULP1 P... [more]
TUB_HUMAN1.016e-2136.81Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]
TULP3_MOUSE1.733e-2137.91Tubby-related protein 3 OS=Mus musculus GN=Tulp3 P... [more]
TULP3_HUMAN1.733e-2137.91Tubby-related protein 3 OS=Homo sapiens GN=TULP3 P... [more]
TUB_RAT2.956e-2136.81Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE2.956e-2136.81Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TULP2_MOUSE1.916e-2036.67Tubby-related protein 2 OS=Mus musculus GN=Tulp2 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_16B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16B08-C16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044219 ID=CX044219; Name=CX044219; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTTTTATTCATAATATGACTGACAAATAAAGATAATGT
CTCAAAGGTAACAATATGATTCAAGTTTACAATTATATAATTCCTGCCGC
TAGAGTTACAATTGAAATTTTACAATAAATGAATAACATTAACAGCAATT
CCCTATCCTGCACTGAACGTATAGGAAACAAATTACAAAGAAAAATGGGG
AAAAGAGATGTCGCAGTCCACCAAACTTTTGATATCTATCATTTATTGTT
CTATTCACAGGCCAGTTTGGTGTCAAAGCTGCTCAAGCAAATAGCAAACG
CCTGAAATGCAAAGAGTGGATAACGATAGTCCATAGTAAACATATCTTTC
CCAACCTTGCCAAACTGGAGAATGATCTTATCATGTTCAGGTGGCGCTGG
TTGAGAGGGAGTGGGTGCACCGGCAGCTGGTTGTGTAGCTGCAATCAACT
GAAAATTCTTAACAGATGCGACAGTCACCCGCCCCCGAAAATTGAGACAC
CAACACTGTAATTGTTCATGCCATCTTGGGGGCTTGTTTTTGAGGATCAA
GGGTCTCAATTTGCCATCCTCATCATCCTCTCTAAGCGCACCAATTTCAG
AAAATCGTGCGCTGCTGAAGTCAACAGAGTGATCCAGTGATTTTGAGAAG
GAGATGCTCCGGAATGAGTCCTCAAGAGAGCGGGGAAGAAGCTCTGGCTG
GCCAGGAACAGAGCCACCTACATCAATTGATGAGGCTGGGATTGAGTGCA
TGATGCAGTGCATCCTTCTGGGGCCTCGTGTGCCAAGCACATTGAGTTCA
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