CX044215

Overview
NameCX044215
Unique NameCX044215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNTR_TRIVI (Ribonuclease Trv OS=Trichoderma viride PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.019e-15
Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = -3
Query:  406 PTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSS---------MQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-----------LNQHQYFQTALNLKNQINLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECN 810
            P+TG P+  + IHGLWP+  DGS+P  CD +  +  + I+D+ ++         MQ  W       GN  +FW HEW KHGTC  ++                +F   ++L   +   Q L  AGI PDGS SY+L+ I+ A+ +  G    + C+
Sbjct:   41 PSTG-PSDSWTIHGLWPDNCDGSFPQTCDASRAY--TNITDILTAMGADDTLQYMQTYWKDY---QGNDESFWEHEWGKHGTCITTLDPGCYDDYVPTEEAADFFSKTVSLFKTLPTYQWLADAGITPDGSKSYALDDIQSALSQQHGAEVTLGCD 190          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNY1B_CANAL (Ribonuclease T2-like 1-B OS=Candida albicans GN=RNY1-B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.861e-15
Identity = 61/227 (26.87%), Postives = 95/227 (41.85%), Query Frame = -3
Query:  277 DTAKSCCY----------------PTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPF------------DQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV------------LNQHQYFQTALNLKNQINLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPP 834
            +   SCCY                P TG P   F  HGLW N     YP  CDP+               DQ    +L ++M  +W       G   +FW+HE+ KHGTC  ++             N + +F+ A+ L N++     L  AGIVP  S +YSL  I+ A+ +  G + +I+C+ + + N   Y  ++       NF+      +     + I++PP
Sbjct:   49 ENVNSCCYESPAGVILLTQFWDYNPATG-PDNLFTQHGLWGNMCSYGYPQFCDPSLEINPNGEIIRSIIVDQFGDEELYNNMSYSWKDY---HGKDSSFWAHEYNKHGTCFSTIKPSCYLSNTPKNQNLYDFFRIAIGLFNKLPTYDWLAEAGIVPTNSKTYSLSEIQSALNDKFGANVFIKCDYNHAINEIWYYHHVKGSLLQHNFLPIDSVAHTNCPSTGIKYPP 271          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNS3_PETHY (Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 50/179 (27.93%), Postives = 85/179 (47.49%), Query Frame = -3
Query:  328 WPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGIT---FWSHEWEKHGTCSESVLNQHQYFQTALNLKNQINLLQALRTAGIVPDGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINC 852
            WP S+C     C      + + +F IHGLWP          C         +  ++ + ++++W  +        T    W HE+ +HG C +++ +Q  YF  A+ LK++++LL  LRT GI P G+ ++   I+ AIK   S   P ++C  +  G  +L +I +C   +A  F  C
Sbjct:   33 WPASFCYPKNKC-----QRRSNNFTIHGLWPEKKRFRLEF-CTGDKYKRFLEEDNIINVLERHWIQMRFDETYANTKQPLWEHEYNRHGICCKNLYDQKAYFLLAMRLKDKLDLLTTLRTHGITP-GTKHTFGEIQKAIKTVTSNNDPDLKCVENIKGVMELNEIGICYTPAADRFDRC 204          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNS6_PYRPY (Ribonuclease S-6 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13
Identity = 45/167 (26.95%), Postives = 83/167 (49.70%), Query Frame = -3
Query:  325 PTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSE--SVLNQHQYFQTALN--LKNQINLLQALRTAGIVPDGSSYSLESIKDAIK-EASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCP 810
            P    P   F +HGLWP+ + G  P  C         QI +L + +   WP +   + + + FW+ +W KHG+C +  ++ ++  YF+T +   +  + N+ + L  A I P+G     + I +AI+       P ++C  +    ++L +I +C D + + FI+CP
Sbjct:   48 PCKDPPDKLFTVHGLWPSNDVGDDPIYCK-NKTIKSQQIGNLTAQLIIIWPNVLDRTDH-VGFWNRQWNKHGSCGKAPTIKDEMHYFKTVIKMYITQKQNVSEILSRAKIEPEGKIRRRDDIINAIRLGTKDKKPKLKCQKNNQ-TTELVEITICSDRNLTQFIDCP 211          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNY1_DEBHA (Ribonuclease T2-like OS=Debaryomyces hansenii GN=RNY1 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 54/201 (26.87%), Postives = 82/201 (40.80%), Query Frame = -3
Query:  277 YPTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQ------SQISD--LRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-------------LNQHQYFQTALNLKNQINLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKKCGSQIEFPP 813
            YP  G   + F +HGLWP+  DG+Y   CD +           +Q  D  L   M + W      +GN  + W HE+ KH TC +++              N + ++   +NL  ++   Q L   GIVP     YS + I DA+ +  G + + +CN  ++     Y  YL       NF       N       I+F P
Sbjct:   72 YPPIGGNES-FTLHGLWPDNCDGTYEQFCDDSLNIRSATDIVLNQFGDKVLYGKMSEFWKNF---NGNDESLWIHEFNKHATCVKTIRPTCYDNQRYVKNKNVYDFYNITMNLYEKLPTFQFLAAEGIVPSLTQKYSKKQINDALTKYFGKAVYFKCNKYKALQEVWYYHYLQGSLKEENFSPIDTIINSNCPEENIQFIP 268          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNY1_YARLI (Ribonuclease T2-like OS=Yarrowia lipolytica GN=RNY1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 58/192 (30.21%), Postives = 85/192 (44.27%), Query Frame = -3
Query:  277 FGIHGLWPNYNDGSYPSNCDPT-------APFDQSQISDLRSSMQKNWPTLACPS-GNGITFWSHEWEKHGTCSESVLN--------QHQ----YFQTALNLKNQINLLQALRTAGIVPDGS-SYSLESIKDAI-KEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNG-KKCGSQIEFPP 783
            F +HGLWP+  DGSY   CD +       A   Q   ++L   M K W     P+ G+  +FW+HEW KH TC  ++ +        Q+Q    +  T +N+   +N  + L  AGI PD S +Y+     +A+     G    I C   +SG       Y  +  S  +    P+   G   C  QI+FPP
Sbjct:   89 FTLHGLWPDNCDGSYAQFCDKSMEVQSVAAVLQQLGETELLDKMNKIW----IPNRGSTDSFWTHEWNKHATCMSTLKDKCYSSDAPQYQSLADWAHTVVNVFETVNTYKFLEAAGITPDSSKTYAKTDFLNALNSNFDGKQVHISC---KSGYISEVWYYFHLKGSVVSGQYLPIDDIGSSSCPDQIKFPP 273          
BLAST of CX044215 vs. ExPASy Swiss-Prot
Match: RNY1_ASPFU (Ribonuclease T2-like OS=Aspergillus fumigatus GN=rny1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 50/188 (26.60%), Postives = 76/188 (40.43%), Query Frame = -3
Query:  304 PTTGKPAADFGIHGLWPNYNDGSYPSNCDPTAPFDQSQI-------SDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-----------LNQHQYFQTALNLKNQINLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASNFINCPVFPNGKK 810
            P  G P   + IHGLWP++ DG +   CD    +    +       +DL   M   W       G+    W HEW KHGTC  ++                YF   + +  ++   Q L  AGIVP  + +Y+L+ I+ A+ +A      I C  + + N   Y   +        F+  P  P+G K
Sbjct:   74 PAVG-PVDSWTIHGLWPDFCDGGFDQYCDSKRRYSNISLILVDSGRADLLEYMSDFWKDF---RGDDEDLWEHEWNKHGTCISTLETTCYADYYPQQEVVDYFNKTVEIFQKLPTYQTLANAGIVPSHTETYTLDEIQAALAKAHAAPVTIRCR-NRALNEVWYHFNIAGSLQTGTFV--PSEPDGLK 254          
The following BLAST results are available for this feature:
BLAST of CX044215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RNTR_TRIVI6.019e-1532.69Ribonuclease Trv OS=Trichoderma viride PE=1 SV=1[more]
RNY1B_CANAL7.861e-1526.87Ribonuclease T2-like 1-B OS=Candida albicans GN=RN... [more]
RNS3_PETHY1.135e-1327.93Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=... [more]
RNS6_PYRPY9.609e-1326.95Ribonuclease S-6 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNY1_DEBHA8.134e-1226.87Ribonuclease T2-like OS=Debaryomyces hansenii GN=R... [more]
RNY1_YARLI1.812e-1130.21Ribonuclease T2-like OS=Yarrowia lipolytica GN=RNY... [more]
RNY1_ASPFU5.273e-1126.60Ribonuclease T2-like OS=Aspergillus fumigatus GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_16B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-16B06-C12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044215 ID=CX044215; Name=CX044215; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTGGCTGTAATTATGGAGCGTAGGATCATCCATAAAACTTTATA
TCTAGTTTGAGAAGACAATAACTTGACAAGCAATTCAATTTGAACATCAA
ATTAAAGAAGCCATTACCACCTTAACGGCTACTGGCTAGGAAATAATTAC
TTGAGCAATTAGTTTGGTAGAACAATATGAGATTGATCAAGAATAAAAAC
GACTGAAATAGAATCAGCTTAGCATGATGAAGAAATTAATCACACACGTT
GATGATTGATCCCTTGATCACTAAAACGGAGGAAACTCAATCTGGGATCC
ACATTTTTTGCCGTTGGGAAAGACGGGGCAGTTGATGAAATTAGAGGCAG
AAGTGTCGACACACAAGTAAATCTGATAAAGCTGGCTGTTGCCTGATTCA
TCAACATTGCATTCTATCCATGGACTGAACCCACTTGCTTCTTTTATCGC
ATCCTTGATGCTTTCCAAGCTGTACGAACTCCCGTCAGGCACTATTCCTG
CGGTTCTGAGAGCTTGGAGGAGATTGATTTGATTTTTCAGGTTAAGAGCT
GTTTGAAAGTACTGATGTTGGTTAAGCACAGACTCAGAGCAAGTGCCGTG
TTTCTCCCATTCATGGGACCAAAATGTTATGCCATTCCCGCTTGGGCAAG
CCAGTGTTGGCCAGTTCTTTTGCATGCTGCTTCGCAGGTCTGATATCTGG
GATTGATCGAAAGGGGCAGTGGGGTCACAGTTGGATGGATAGGAGCCATC
GTTGTAATTAGGCCAGAGTCCATGAATCCCGAAATCTGCTGCTGGCTTTC
CAGTCGTTGGATAGCAGCAACTCTTCGCTGTATCACAGTATGATCCTGGC
CACTGCA
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