CX044130

Overview
NameCX044130
Unique NameCX044130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 38/80 (47.50%), Postives = 41/80 (51.25%), Query Frame = -3
Query:  584 EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHEHKL 823
            +DGY WRKYGQK +   K+PRSYYRCTY     C   KQVQR   D      TY G H       S P   S E  EH L
Sbjct:   67 DDGYRWRKYGQKAVKNNKFPRSYYRCTY---GGCNVKKQVQRLTVDQEVVVTTYEGVH-------SHPIEKSTENFEHIL 136          
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  650 PFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 829
            P +DGY+WRKYGQK I G +YPRSYY+CT+    NC   K+V+RS +   T ++ Y+G H
Sbjct:  165 PADDGYNWRKYGQKPIKGCEYPRSYYKCTH---VNCPVKKKVERSSDGQIT-QIIYKGQH 220          

HSP 2 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 35/94 (37.23%), Postives = 47/94 (50.00%), Query Frame = -3
Query:  557 EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH-----TCFNGSQSVPQPASPEKHEHKLNHHSDNHQK 823
            +DGY WRKYGQK + G  +PRSYY+CT   T NC   K V+R+  D      TY G H        NG+ +    A      H++   S N+ +
Sbjct:  306 DDGYRWRKYGQKVVKGNPHPRSYYKCT---TPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTAAATAAAVGPSDHHRMRSMSGNNMQ 396          
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = -3
Query:  650 PFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 829
            P +DGY+WRKYGQK + G++YPRSYY+CT+    NC A K+V+RS E     E+ Y G H
Sbjct:  176 PADDGYNWRKYGQKLVKGSEYPRSYYKCTH---PNCEAKKKVERSREG-HIIEIIYTGDH 231          
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 31/58 (53.45%), Postives = 36/58 (62.07%), Query Frame = -3
Query:  650 EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 823
            +DGY WRKYGQK +    +PRSYYRCTY     C   KQVQR  +DP+    TY G H
Sbjct:   98 DDGYRWRKYGQKSVKHNAHPRSYYRCTY---HTCNVKKQVQRLAKDPNVVVTTYEGVH 152          
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = -3
Query:  593 EDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPASPEKHE 823
            +DGY WRKYGQK +  + YPRSYYRCT      C   KQVQR  ++ S  E TY G H   +  + + Q  +P  H+
Sbjct:   30 DDGYRWRKYGQKSVKNSLYPRSYYRCT---QHMCNVKKQVQRLSKETSIVETTYEGIHN--HPCEELMQTLTPLLHQ 101          
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = -3
Query:  536 GPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTHTCFNGSQSVPQPAS--PEKHEHKLNHHSDNHQKGSGINSE 832
            G  +DGY WRKYGQK I  +  PRSYY+CT      C A KQV+RS ++ +T+ +TY G H  +     +P      P K      H++ +  K S    E
Sbjct:  111 GMCDDGYKWRKYGQKSIKNSPNPRSYYKCT---NPICNAKKQVERSIDESNTYIITYEGFHFHYTYPFFLPDKTRQWPNKKTKIHKHNAQDMNKKSQTQEE 208          
BLAST of CX044130 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = -3
Query:  650 VSFESGLKGPFEDGYSWRKYGQKDILGAKYPRSYYRCTYRNTQNCWATKQVQRSDEDPSTFEVTYRGTH 856
            VS+    +   EDGY+WRKYGQK + G++ PRSYY+CT+    NC   K+V+RS E   T E+ Y+G+H
Sbjct:  173 VSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTF---PNCPTKKKVERSLEGQIT-EIVYKGSH 237          
The following BLAST results are available for this feature:
BLAST of CX044130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
WRK75_ARATH5.273e-1147.50Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK58_ARATH5.273e-1151.67Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK34_ARATH5.273e-1153.33Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK24_ARATH5.273e-1153.45Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK43_ARATH6.886e-1144.16Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK49_ARATH8.994e-1137.62Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK33_ARATH8.994e-1147.83Probable WRKY transcription factor 33 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_15F01_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15F01-K1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044130 ID=CX044130; Name=CX044130; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTTTTGCAAATCAAGTTTATTATAACTGCTTCTCATAGACAAAGTG
GAAACTAACAAGTGATACTGAGACTAGTTTATATCTCTTAGCCACCAGAA
AGAAGGCTCTTATGTTTCTAAATTATCTGTTCTTCTATTACATATTACAA
ACCAGGATAAAGCAATGAAATAGAATTAGAATGAGAATCCTGCATTGTCA
AATGGGAAGTTTGAATCGAGTTCTGCCGCATCAATGGAGAAATCCAAGTT
CAAAATTGGAGAATTGGCGACTGAATTATTGGCTGATTGTAGCTCAGGGA
GTTCAGATTCTGATTGCTGCAGATTATGAACATCTCCAAAGTTCATCTGG
TTTTGTGAAATGTAATAAAAGTTTGATTCCGCTGCTGCAGGAGGTATAAA
CGATGAGGAGAAACCACCCAAGAAATTATTCTCGTCAAGCATCAAAGATG
AAAAGCAATAGTCATTGCTCTTCATGCATCCAAGTGATGATGTCGGAAAA
GAGAAAGGAGATGCAATTTCCTTATTGTCCAAATACTCACTATTGATACC
TGAGCCTTTTTGATGATTGTCGCTATGGTGGTTTAGTTTGTGTTCATGTT
TTTCTGGCGATGCTGGTTGTGGAACCGATTGGCTGCCATTGAAACAAGTG
TGTGTTCCTCTGTATGTGACCTCAAAAGTGGAGGGGTCTTCATCTGATCT
TTGCACTTGCTTTGTCGCCCAACAATTTTGTGTATTTCTGTAGGTGCATC
TGTAATAGCTTCTGGGATATTTGGCTCCGAGGATATCTTTCTGGCCATAT
TTTCTCCAGCTATAGCCATCTTCAAAGGGTCCTTTCAGGCCACTCTCAAA
ACTGACCT
back to top