CX044104

Overview
NameCX044104
Unique NameCX044104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX044104 vs. ExPASy Swiss-Prot
Match: ABL1_HUMAN (Proto-oncogene tyrosine-protein kinase ABL1 OS=Homo sapiens GN=ABL1 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 9.898e-11
Identity = 54/211 (25.59%), Postives = 99/211 (46.92%), Query Frame = -3 
Query:  288 HENLASLRGICCSKGRGECFLIYDFVPNGNLLQHLD----LEAGSEKVLEWATRISVIKGIAKGISYLHGKRPGLVHPNLSAEKVLIHRRYNPLLSDSGLHKLLADDIVFSMLKASAAMGYLAPEYTTTGRFTEKSDIYAFGMIVFQILSGKCSITPFTRQAAESSKVEDFIDPNLEGKFSVSEASNLGQIALHCTHESPSHRPSIENVMQ 908
            H NL  L G+C  +     ++I +F+  GNLL +L      E  +  +L  AT+IS        + YL  K    +H +L+A   L+   +   ++D GL +L+  D   +   A   + + APE     +F+ KSD++AFG+++++I +   S  P      + S+V + ++ +   +        + ++   C   +PS RPS   + Q
Sbjct:  295 HPNLVQLLGVCTREP--PFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS------SAMEYLEKKN--FIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP----GIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 491
The following BLAST results are available for this feature:
BLAST of CX044104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 311
Match NameE-valueIdentityDescription
ABL1_HUMAN9.898e-1125.59Proto-oncogene tyrosine-protein kinase ABL1 OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_15D07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15D07-G13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044104 ID=CX044104; Name=CX044104; organism=Citrus sinensis; type=EST; length=910bp
CGAACTTTTGAACCACATAAAAGTTAATAAGTCGTTCTGGCGAGAAGCCA
ACTTGTTACATCGCTAAACTTCAATTACTATTAACTAAAGGGTTTACATT
AAAGGCCCACCAGGTTCCAAGAATAGATTACACCACTCCAAGTTCATGAT
TTCACAGCTTCAGTCCTCGGGTAAAGGACAGTACAAATAAGCATTAGGGG
GTGATTGATCCATCTTGCCTCTTGGAGCTGAAAAATGAGGCAAAACCTCA
GTCAAAGTTATGAACTGCCAATAATACTGCTCAATTCCTGCATCACGTTT
TCTATGGATGGCCTGTGGCTAGGAGATTCATGGGTGCAATGTAGAGCAAT
TTGCCCGAGGTTAGATGCCTCAGACACTGAAAACTTTCCTTCAAGATTTG
GGTCGATGAAATCTTCAACCTTAGATGACTCTGCTGCCTGGCGAGTGAAT
GGGGTGATACTACATTTTCCACTCAGAATCTGGAATACAATCATTCCAAA
TGCATATATGTCACTCTTTTCTGTGAATCGCCCAGTGGTGGTGTATTCAG
GAGCCAGATATCCCATGGCAGCACTGGCTTTGAGCATTGAGAAAACAATA
TCATCTGCAAGGAGTTTGTGCAGGCCAGAATCTGAAAGCAAGGGATTATA
TCGTCTATGAATGAGCACCTTCTCAGCAGACAAATTCGGGTGAACTAGAC
CAGGTCTCTTTCCATGTAAATAACTGATCCCTTTGGCAATTCCCTTTATG
ACAGAAATTCTGGTAGCCCATTCAAGAACCTTTTCACTGCCTGCCTCTAA
ATCAAGATGCTGTAAGAGGTTTCCATTGGGGACAAAATCATAGATGAGAA
AACACTCACCTCTGCCTTTTGAACAGCAGATACCTCTCAAGCTGGCAAGA
TTTTCATGTT
back to top