CX044092

Overview
NameCX044092
Unique NameCX044092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: LAC16_ORYSJ (Putative laccase-16 OS=Oryza sativa subsp. japonica GN=LAC16 PE=5 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:  583 TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIE 879
            T  G+ V ++   T V+V+ Q+ +      SE HP HLHG  F+V+GRG G F +  +              V  P   W A+RF ADNPG W  HCH +
Sbjct:  341 TKRGTKVKVVEYGTVVEVVFQDLS------SENHPMHLHGFAFYVVGRGSGTFDERRDPATYNLVDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFD 434          
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: LAC6_ORYSJ (Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  568 PVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKE--DEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 879
            P+ +  +  + V  L  N TV+++LQN   +     E+HP HLHG +F+V+ +G G    E                T  +   GW  +RFVADNPG WA HCHI+
Sbjct:  445 PLASTGSPSTKVKTLRYNATVEMVLQNTALVG---LESHPMHLHGFNFFVVAQGFGNNDGEAAGAGEFNLVNPQERNTVAVPTGGWAVIRFVADNPGMWAMHCHID 547          
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 36/120 (30.00%), Postives = 54/120 (45.00%), Query Frame = 1
Query:  520 NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 879
            NG P + +N+              G+   +    + + +I QN   +    +E HP HLHGH F+V+G G G + ++                V    GW A+RFVA+NPG W  HCH +
Sbjct:  430 NGAPNDIANDTQAAN---------GTRAIVFEYGSRIQIIFQNTGTLT---TENHPIHLHGHSFYVIGYGTGNYDQQTAKFNLEDPPYLNTIGVPVG-GWAAIRFVANNPGLWLLHCHFD 536          
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  619 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 879
            NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D             T  +   GW A+RFV DNPG W  HCH E
Sbjct:  465 NTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE 549          
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  619 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 879
            NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D             T  +   GW A+RFV DNPG W  HCH E
Sbjct:  465 NTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE 549          
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  619 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 879
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D             T  +   GW A+RF+ADNPG W  HCH E
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLADNPGMWYLHCHFE 554          
BLAST of CX044092 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/97 (38.14%), Postives = 47/97 (48.45%), Query Frame = 1
Query:  595 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGK--FTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 879
            +  Y+      VDVI+ N +  +      HP+HLHGH F VL RGE       + E            T  I P  +  +RF+ADNPGAW  HCHIE
Sbjct:  394 TNAYIFEYGDVVDVIIDNHDTGK------HPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIE 484          
The following BLAST results are available for this feature:
BLAST of CX044092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
LAC16_ORYSJ6.523e-1237.00Putative laccase-16 OS=Oryza sativa subsp. japonic... [more]
LAC6_ORYSJ1.898e-1135.85Laccase-6 OS=Oryza sativa subsp. japonica GN=LAC6 ... [more]
LAC6_ARATH1.898e-1130.00Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC19_ORYSJ1.898e-1138.64Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSI1.898e-1138.64Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]
LAC18_ORYSJ4.228e-1137.50Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
FIO1_SCHPO5.522e-1138.14Iron transport multicopper oxidase fio1 OS=Schizos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_15C09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-15C09-E17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044092 ID=CX044092; Name=CX044092; organism=Citrus sinensis; type=EST; length=880bp
CTGGATCTCAGCTGGTGTTAGGGGAAGAAAACCTGCAACCCCTCCGGCCC
TAACACTCTTAAACTATCATCCCACTTCTGCTTCCAAAATCCCTCTCTCC
CCACCACCTATAACCCCTCTCCTCAAGGCCATTACGTTGGATTGGTGAGC
CACAGACACTGCTGATAAACGGAAGAGGGCAATTCAATTGTTCACTGGCG
GCGCATTTTAGCAACGGCTCGGCGGAACAGTGCAAGTTAAGAGGGAATGA
ACAGTGCGCACCCCAGATCCTGCATGTTCAACCAAACAAGACCTACAGGC
TCAGGATAGCTAGTACCACTGCACTCGCTTCACTCAACTTGGCTGTCAAG
AATCACAAAATGGTGGTTGTGGAGGCTGATGGAAATTACGTGCAACCATT
TGAAGTAGATGACATGGACATATATTCTGGTGAGAGCTATTCGGTCTTAT
TAACAACAAATCAAGATCCCTCCTTACTTAGGATCCATCAAATATGGTCT
TAAAGATGCTTTTGATCAGAATGGTCCCCCCGAAAACTTCTCGAATGAGT
ATGACGTGATGAAACCTCCTGTAAACGCTAATACAACTCTTGGAAGTGGG
GTTTACATGCTTGGTTTAAACACCACAGTTGATGTTATACTTCAAAATGC
AAACGCGATAAGGCCAAACTTGAGTGAAACCCACCCTTGGCATTTGCATG
GGCATGATTTTTGGGTATTAGGGCGCGGAGAAGGGAAGTTTACGAAAGAA
GATGAGAAGAAATTTAACTTGAAGAATCCACCATTGAAAAATACTGCGGT
GATATTCCCATATGGCTGGACTGCTTTAAGATTTGTTGCTGATAATCCAG
GTGCTTGGGCATTTCACTGCCATATTGAGC
back to top