CX044014

Overview
NameCX044014
Unique NameCX044014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METM7 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/148 (43.92%), Postives = 82/148 (55.41%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            +AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L VLNSYW+ +D   K++EVILVD  H +I++D   NWLC   HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:   47 RARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGTEKVRPSVRANSKK 192          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 65/148 (43.92%), Postives = 82/148 (55.41%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            +AR LGYKAKQ                         KP+  G+ ++   +S + +AEERA +K   L VLNSYW+ +D   K++EVILVD  H +I++D   NWLC   HK R  RGLTSAGKK RGL  KG    K RPS RA  K+
Sbjct:   47 RARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGLMYKGKGAEKVRPSVRANSKK 192          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METKA (50S ribosomal protein L15e OS=Methanopyrus kandleri GN=rpl15e PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 66/148 (44.59%), Postives = 81/148 (54.73%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            +ARRLGY+AK                          +P   G  +    +SK+ +AEERA RK   L VLNSYW+ ED  YKY+EVI+VDP H  I++D RINW+C    K R  RG T AGKK RGLR +G    K RPS RA  +R
Sbjct:   50 RARRLGYRAKPGYVVVRVRVPKGGRRKSRPKK--GRRPKRMGKNKFSPGKSKQWIAEERAQRKYPNLEVLNSYWVGEDGQYKYYEVIMVDPYHPQIKSDHRINWICQKSQKGRVFRGKTGAGKKARGLRKRGKGAEKVRPSLRAHRRR 195          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 66/152 (43.42%), Postives = 87/152 (57.24%), Query Frame = -1
Query:  266 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 718
            KAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   LR LNSYW+ ED + K+FE IL+DP H AI+ND  +NW+C+  HK+R  RG TSAG++ RGL+ +G      RPS  A  KRN +
Sbjct:   49 KARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNAD-KRNKS 196          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_HALS3 (50S ribosomal protein L15e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25
Identity = 66/152 (43.42%), Postives = 87/152 (57.24%), Query Frame = -1
Query:  266 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTN-QGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 718
            KAR LGYKAKQ                        G+ T  QGV ++   ++ + +AEERA RK   LR LNSYW+ ED + K+FE IL+DP H AI+ND  +NW+C+  HK+R  RG TSAG++ RGL+ +G      RPS  A  KRN +
Sbjct:   49 KARELGYKAKQGVVVVRVSVRKGTARKSRFKA---GRRTKRQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRGKGTEGLRPSTNAD-KRNKS 196          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_NATPD (50S ribosomal protein L15e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 63/148 (42.57%), Postives = 85/148 (57.43%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            KAR LGYKAKQ                         K   QGV ++  +++ + +AEER+GRK   LRVLNSYW+ ED + K+FEVIL+DP H AI+ND  ++W+C+   + R  RG TSAG++ RG + +G      RPS RA  KR
Sbjct:   49 KARSLGYKAKQGVVVARVSVRKGTARKQRFKAGRRSK--RQGVNKITRRKNLQRIAEERSGRKFRNLRVLNSYWVGEDGSQKWFEVILLDPEHGAIQNDDDLSWICDDSQRGRAYRGRTSAGQRGRGQQKRGKGTEHTRPSIRANDKR 194          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 62/148 (41.89%), Postives = 81/148 (54.73%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            +AR LGYKAKQ                         KP   G+ ++   +S + +AEERA ++   + VLNSYW+ +D   K++E+ILVDP H +I+ND   +WL    HK R  RGLTSAGKK RGL  KG    KARP  RA  K+
Sbjct:   47 RARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKNDKSYSWLSTGNHKGRANRGLTSAGKKGRGLMYKGKGAEKARPGVRANGKK 192          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  302 KPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKAR 610
            +PT  GV ++   +S + +AEER  RK   + VLNSYW+ ED  YK++EVILVDP H AI+NDP+I W+C   H+ R  RGL S GKK RGLR +G    K R
Sbjct:   80 RPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPKIYWICVKQHRGRVFRGLISEGKKNRGLRNRGKGAEKVR 182          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 65/148 (43.92%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            +AR LGYKAKQ                         +P   G+      +S R +AEERA RK   L VLNSY++ ED  YK++EVILVDP H AI NDP I W+C   H+ R  RGLTSAGKK RGLR    L +    + +  WKR
Sbjct:   49 RARALGYKAKQGFIIVRVRVRKGGLRKQRPNK--GRRPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDPDIKWICEKQHRRRVFRGLTSAGKKMRGLRKSRGLKY----TIKYKWKR 190          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_HALLT (50S ribosomal protein L15e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24
Identity = 65/141 (46.10%), Postives = 78/141 (55.32%), Query Frame = -1
Query:  296 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 718
            KAR LGYKAKQ                         K   QGV +L  ++S + ++EERA RK   LRVLNSYW+ ED + K+ EVILVDP H AI ND  + W+ +  HK R  RGLTSAG K RG R +G    K RPS
Sbjct:   49 KARELGYKAKQGVVVARVSVRKGGSRKQRHKAGRRSK--RQGVNRLSRRKSIQRISEERASRKYRNLRVLNSYWVGEDGSQKWHEVILVDPNHPAIENDGDLGWIASDDHKGRAFRGLTSAGTKGRGQRTRGTGTEKTRPS 187          
The following BLAST results are available for this feature:
BLAST of CX044014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL15E_METM75.653e-2643.9250S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METM65.653e-2643.9250S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METKA7.383e-2644.5950S ribosomal protein L15e OS=Methanopyrus kandler... [more]
RL15E_HALSA1.259e-2543.4250S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_HALS31.259e-2543.4250S ribosomal protein L15e OS=Halobacterium salina... [more]
RL15E_NATPD1.392e-2442.5750S ribosomal protein L15e OS=Natronomonas pharaon... [more]
RL15E_METMP1.818e-2441.8950S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_METTH3.102e-2451.4650S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_STAMF4.051e-2443.9250S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_HALLT5.291e-2446.1050S ribosomal protein L15e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14H02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H02-P4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044014 ID=CX044014; Name=CX044014; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTGACGAAACAAATACTCAACAAGACCTTAAACAG
AATGAGACATTTAAGGCTCTTATAATTCAAGGTAGACTCAAGAAACACAA
ATGTCTTAATTTAGAATGTACGGTTTCAAAATAAGATATGTTCCATAGTA
TTTCAATCTCTAAAAGACTCAAAATGGCAACTACTATGTCCTCCAGACAA
AATCCCTCAACTGATGATAAACATCAAAACCGTAACAATGATCAACGGTA
GCGACGGAGGGAAAGAGTATTGTTTCTCTTCCAGGTAGCCCTGCGCGAAG
GCCGAGCCTTGTGGTGCAAGTGTCCTTTTCCACGTAGGCCTCTGTACTTC
TTACCTGCAGAAGTAAGACCACGGAGTTCCCTGTGCTTATGGACAGGATT
GCATAACCAATTAATTCTTGGGTCATTACGGATGGCATTATGAGCAGGAT
CAACCAAGATCACCTCAAAGTACTTATAAGTGGAGTCCTCATTGATCCAG
TAAGAATTGAGAACCCTAAGACCTCCCAACTTACGACCGGCACGCTCCTC
TGCAACAGACCTCTTGCTGCGCTGAAACTTCAGTTGAGTAACACCCTGGT
TTGTGGGTTTACCATACACAATGCCCTTGGGAACAGGCCTCTTCCGACCA
CCGCGCCTTACCCGCACACGATAAACAACATAACCCTGCTTGGCCTTGTA
ACCCAAGCGTCGAGCCTT
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