CX044014

Overview
NameCX044014
Unique NameCX044014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULIM (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 60/141 (42.55%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  308 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 718
            +AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:   47 RARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULIL (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 60/141 (42.55%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  308 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 718
            +AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:   47 RARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULIK (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 60/141 (42.55%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  308 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 718
            +AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:   47 RARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULIA (50S ribosomal protein L15e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 60/141 (42.55%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  308 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRG----KGHLHHK 718
            +AR LGYKAKQ                         +P   GV      +  + +AEERA RK   L VL SY++ ED  YKY+E+I+VDP+H  I+NDP   WL +P +++R  RGLTSAGKK RGLR     KG + HK
Sbjct:   47 RARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYGPAKGYKWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIIMVDPSHPVIKNDPNYKWLQDPSNRNRVFRGLTSAGKKARGLRKSKGFKGTVKHK 185          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METAC (50S ribosomal protein L15e OS=Methanosarcina acetivorans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 60/145 (41.38%), Postives = 80/145 (55.17%), Query Frame = -1
Query:  287 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 718
            +AR LGYKAKQ                        G+ T + G  ++    S + +AE RA R+   L VLNSYW+ ED  +K+FEVILVDP H  I++D  +NW+C+P  + R  RG TSAG+K RG+  +G    K RPS RA
Sbjct:   49 RARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEVRADRRYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWVCDPSSRGRATRGKTSAGRKGRGMATRGKGTEKTRPSIRA 190          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_HALMA (50S ribosomal protein L15e OS=Haloarcula marismortui GN=rpl15e PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 61/144 (42.36%), Postives = 77/144 (53.47%), Query Frame = -1
Query:  287 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 718
            KAR  GYKAKQ                         K   QGVT++  ++  + VAEERA R    LRVLNSY + +D   K+ EVIL+DP H AI+ND  ++W+C      R  RGLT AG++ RGL GKG    K RPS R+
Sbjct:   49 KARSQGYKAKQGVIVARVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRS 190          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_ARCFU (50S ribosomal protein L15e OS=Archaeoglobus fulgidus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = -1
Query:  275 VAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 556
            +AEERA RK   + VLNSYW+ ED  YK+FEVILVD  H AI++DP+++W+     + R  RGLTSAG+K RGLR KG    K RPS RA +++
Sbjct:  100 IAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRT--RGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRK 191          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULSO (50S ribosomal protein L15e OS=Sulfolobus solfataricus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = -1
Query:  332 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLR 718
            +AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L VL SY++ ED  YKY+E+++VDP+H  I++DP+  WL +P +++R  RGLTSAGKK RGLR
Sbjct:   47 RARSLGYKAKQGFVIVRVRVRRGGLNKPRPNK--GRRPKRMGVYGYSPAKGYRWIAEERAARKYPNLEVLGSYYVGEDGLYKYYEIVMVDPSHPVIKSDPKHKWLQDPSNRNRVFRGLTSAGKKVRGLR 173          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METMA (50S ribosomal protein L15e OS=Methanosarcina mazei GN=rpl15e PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.458e-21
Identity = 60/145 (41.38%), Postives = 79/145 (54.48%), Query Frame = -1
Query:  287 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 718
            +AR LGYKAKQ                        G+ T + G  ++    S + +AE RA RK   L VLNSYW+ ED  +K+FEVILVDP H  I++D  +NW+C+   + R  RG TSAG+K RG+  +G    K RPS RA
Sbjct:   49 RARSLGYKAKQGIVVVRVNVRRGGLGHVRPNR---GRRTQKMGKNKVSGGMSIQRIAEARADRKYPNLEVLNSYWVGEDGKHKWFEVILVDPHHPVIKSDKNLNWICDASIRGRATRGKTSAGRKGRGMSTRGKGTEKTRPSIRA 190          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 59/141 (41.84%), Postives = 77/141 (54.61%), Query Frame = -1
Query:  308 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHK 718
            +AR +GYKAKQ                         +P   GV      +  R +AEE+A RK   L VL SY++ ED  YKY+E+I+VDP H  I++DP + WL +P ++ R  RGLTSAGKK RGL   RG KG + HK
Sbjct:   46 RARAIGYKAKQGFVVVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTVKHK 184          
The following BLAST results are available for this feature:
BLAST of CX044014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL15E_SULIM6.468e-2242.5550S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIL6.468e-2242.5550S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIK6.468e-2242.5550S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_SULIA6.468e-2242.5550S ribosomal protein L15e OS=Sulfolobus islandicu... [more]
RL15E_METAC6.468e-2241.3850S ribosomal protein L15e OS=Methanosarcina aceti... [more]
RL15E_HALMA1.441e-2142.3650S ribosomal protein L15e OS=Haloarcula marismort... [more]
RL15E_ARCFU1.882e-2154.2650S ribosomal protein L15e OS=Archaeoglobus fulgid... [more]
RL15E_SULSO2.458e-2142.6450S ribosomal protein L15e OS=Sulfolobus solfatari... [more]
RL15E_METMA2.458e-2141.3850S ribosomal protein L15e OS=Methanosarcina mazei... [more]
RL15E_SULTO4.192e-2141.8450S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14H02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H02-P4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044014 ID=CX044014; Name=CX044014; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTGACGAAACAAATACTCAACAAGACCTTAAACAG
AATGAGACATTTAAGGCTCTTATAATTCAAGGTAGACTCAAGAAACACAA
ATGTCTTAATTTAGAATGTACGGTTTCAAAATAAGATATGTTCCATAGTA
TTTCAATCTCTAAAAGACTCAAAATGGCAACTACTATGTCCTCCAGACAA
AATCCCTCAACTGATGATAAACATCAAAACCGTAACAATGATCAACGGTA
GCGACGGAGGGAAAGAGTATTGTTTCTCTTCCAGGTAGCCCTGCGCGAAG
GCCGAGCCTTGTGGTGCAAGTGTCCTTTTCCACGTAGGCCTCTGTACTTC
TTACCTGCAGAAGTAAGACCACGGAGTTCCCTGTGCTTATGGACAGGATT
GCATAACCAATTAATTCTTGGGTCATTACGGATGGCATTATGAGCAGGAT
CAACCAAGATCACCTCAAAGTACTTATAAGTGGAGTCCTCATTGATCCAG
TAAGAATTGAGAACCCTAAGACCTCCCAACTTACGACCGGCACGCTCCTC
TGCAACAGACCTCTTGCTGCGCTGAAACTTCAGTTGAGTAACACCCTGGT
TTGTGGGTTTACCATACACAATGCCCTTGGGAACAGGCCTCTTCCGACCA
CCGCGCCTTACCCGCACACGATAAACAACATAACCCTGCTTGGCCTTGTA
ACCCAAGCGTCGAGCCTT
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