CX044014

Overview
NameCX044014
Unique NameCX044014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_THEVO (50S ribosomal protein L15e OS=Thermoplasma volcanium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 62/145 (42.76%), Postives = 79/145 (54.48%), Query Frame = -1
Query:  287 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 718
            +AR LGYK+K                      I+ G+ P      +L  ++S + +AEERA  K   L VLNSY++ ED  YKY+EVILVD +H  I NDP I+W+  P +  R  RGLTSAG K RGLR       K+RPS RA
Sbjct:   50 RARALGYKSKDGFIVVRSRVRRGGSNREK---IMGGRRPRRLAYNKLTRKKSLKLIAEERAADKYPNLEVLNSYYVGEDGLYKYYEVILVDKSHPNIYNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRA 191          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_THEAC (50S ribosomal protein L15e OS=Thermoplasma acidophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = -1
Query:  287 KPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 610
            +P      +L  ++S + +AEERA  K   + VLNSY++ ED  YKYFEVILVD +H  I NDP I+W+  P +  R  RGLTSAG K RGLR       K+RPS R+
Sbjct:   84 RPRRMAYNKLTRKKSLKLIAEERAADKYPNMEVLNSYYVGEDGLYKYFEVILVDRSHPNIFNDPHISWISEPQNTGRVYRGLTSAGYKVRGLRTGRKGSSKSRPSIRS 191          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METB6 (50S ribosomal protein L15e OS=Methanoregula boonei (strain 6A8) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 56/144 (38.89%), Postives = 76/144 (52.78%), Query Frame = -1
Query:  287 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA 718
            +AR LGYKAKQ                     +   +    G       +S + +AEERA  +   + VLNSYW+ +D   KY+EVILVD  H +I++D  + WL NP H+ R  RG TSAG+K RG+R +G    K RPS R+
Sbjct:   49 RARALGYKAKQGIAVVRVHVRRGGRRASRY--VRARRSARMGKNSSTPGKSIQRIAEERASVRYPNMEVLNSYWVGQDGKLKYYEVILVDGHHPSIQSDKNLAWLANPTHRGRAERGKTSAGRKGRGMRTRGRGTEKTRPSIRS 190          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_META3 (50S ribosomal protein L15e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 59/147 (40.14%), Postives = 75/147 (51.02%), Query Frame = -1
Query:  278 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 718
            +AR LGYKAKQ                         KP    + ++   +S + +AEERA ++   L VLNSY + ED   K++EVIL+D  H +I+ND     LC   H +R  RGLTSAGKK RGL  KG    K RP  RA  K
Sbjct:   47 RARSLGYKAKQGVIVARVAVRRGGLRKPRPKHSK--KPATMAMNKITMSKSIQRIAEERAAKRYPNLEVLNSYSVGEDGKRKWYEVILIDVNHPSIKNDSSYKNLCTGKHTNRVFRGLTSAGKKGRGLMNKGKGAEKVRPGIRANKK 191          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_UNCMA (50S ribosomal protein L15e OS=Uncultured methanogenic archaeon RC-I GN=rpl15e PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 58/148 (39.19%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  275 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKR 718
            +AR LGYKAKQ                         K  + G+  L  + S + +AE RA RK   + VLNSYW+ +D  +K++E+ILVDP H +I +D  ++W+    H+ R  RGLTSAGKK RG R KG    K  PS +A  +R
Sbjct:   49 RARALGYKAKQGIIVARAHVRRGGRRKSRYSR--GRKSKHMGLRTLTRRTSIQRMAEVRASRKFPNMEVLNSYWVGQDGKHKWYEIILVDPHHPSIASDKNLSWITKGTHRGRAERGLTSAGKKGRGQRRKGKGTEKNYPSVQAHDRR 194          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_PICTO (50S ribosomal protein L15e OS=Picrophilus torridus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.761e-19
Identity = 61/146 (41.78%), Postives = 82/146 (56.16%), Query Frame = -1
Query:  287 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGK-PTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHL-HHKARPSRRA 718
            +AR LGYKAKQ                     I+ G+ P      +L  ++S + +AEERA  K   + VLNSY++ ED  YKY+EVIL+D +  A+ +D  ++W+ N  +K R  RGLTSAG K RGL G G L   K+RPS RA
Sbjct:   48 RARSLGYKAKQGFIIVRSRVRKGGQHRPK---IMGGRRPRRLAYNKLTVKKSIQLIAEERAADKYPNMEVLNSYYVGEDGLYKYYEVILIDRSSPAVLSDKNVSWIANSANKGRVYRGLTSAGYKSRGL-GHGRLGSAKSRPSIRA 189          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_SULAC (50S ribosomal protein L15e OS=Sulfolobus acidocaldarius GN=rpl15e PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 60/147 (40.82%), Postives = 79/147 (53.74%), Query Frame = -1
Query:  290 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGL---RG-KGHLHHKARPSRR 718
            +AR LGYKAKQ                         +P   GV      +  R +AEERA RK   L VL SY++ ED  YKY+EVI+VD +H  IR+DP + WL + V++ R  RGLTSAG+K RGL   RG KG +  K +  ++
Sbjct:   47 RARALGYKAKQGFVMVRVRVRRGGLNKPRPNS--GRRPKRMGVYGYGPSKGYRWIAEERAARKFPNLEVLGSYYVAEDGMYKYYEVIMVDYSHPVIRSDPELKWLQDSVNRKRVFRGLTSAGQKSRGLTKSRGLKGTVQRKWKKKQK 191          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15_QUESU (60S ribosomal protein L15 OS=Quercus suber GN=RPL15 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 61/150 (40.67%), Postives = 72/150 (48.00%), Query Frame = -1
Query:  269 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNN 718
            KARRLGYKAKQ                    G  +GKP NQG+ QLKFQRS RS AEER  R+ GGLR+LNSYWI +  +    +  L  P+       P       P      L      GK+ RGL G+G  H K+     A WKR N
Sbjct:   47 KARRLGYKAKQGYVIYRVRVRRGNRKRPAPKGATFGKPVNQGINQLKFQRSLRSTAEERVARRCGGLRILNSYWITKTVSTSTLKSSLSTPSTRLSVVMPVSTGSATPYTSAENLAVSHPLGKQNRGL-GRGSKHTKS--PNHAFWKRTN 193          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_NANEQ (50S ribosomal protein L15e OS=Nanoarchaeum equitans GN=rpl15e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 45/93 (48.39%), Postives = 57/93 (61.29%), Query Frame = -1
Query:  278 VAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 556
            +AEERA R    + VL SYW+ ED  YK++EVILVDP +  I N P   WL     + R  RG TS+ +K+RGLR  G    K RPS+RA +K
Sbjct:   97 IAEERANRLHRNMEVLGSYWVGEDGLYKWYEVILVDPFNPNIYNRPEYVWLLQKNQRGRVFRGKTSSARKFRGLRNGGLGAEKVRPSKRANFK 189          
BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_METLZ (50S ribosomal protein L15e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  296 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQ-GVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPS 718
            +AR LGYKAKQ                      + G+ TN+ G+ +    ++ +S+AEERA  +   + VLNSYW+ +D   KY+EVILVD    ++  D  + W+ +   + R  RG TSAG++ RGL  +G    K RPS
Sbjct:   49 RARELGYKAKQGIIVVRASIRRGGRRKSRY---IRGRRTNRMGMRKATPGKNLQSIAEERAATRYPNMEVLNSYWVGQDGKSKYYEVILVDRNSPSVLADKNLAWVADT--RGRVFRGKTSAGRRARGLHNRGTGTEKCRPS 185          
The following BLAST results are available for this feature:
BLAST of CX044014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL15E_THEVO7.151e-2142.7650S ribosomal protein L15e OS=Thermoplasma volcani... [more]
RL15E_THEAC2.081e-2048.1550S ribosomal protein L15e OS=Thermoplasma acidoph... [more]
RL15E_METB62.717e-2038.8950S ribosomal protein L15e OS=Methanoregula boonei... [more]
RL15E_META33.549e-2040.1450S ribosomal protein L15e OS=Methanococcus aeolic... [more]
RL15E_UNCMA4.635e-2039.1950S ribosomal protein L15e OS=Uncultured methanoge... [more]
RL15E_PICTO1.761e-1941.7850S ribosomal protein L15e OS=Picrophilus torridus... [more]
RL15E_SULAC2.300e-1940.8250S ribosomal protein L15e OS=Sulfolobus acidocald... [more]
RL15_QUESU8.741e-1940.6760S ribosomal protein L15 OS=Quercus suber GN=RPL1... [more]
RL15E_NANEQ2.812e-1748.3950S ribosomal protein L15e OS=Nanoarchaeum equitan... [more]
RL15E_METLZ1.543e-1535.9250S ribosomal protein L15e OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14H02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H02-P4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044014 ID=CX044014; Name=CX044014; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTGACGAAACAAATACTCAACAAGACCTTAAACAG
AATGAGACATTTAAGGCTCTTATAATTCAAGGTAGACTCAAGAAACACAA
ATGTCTTAATTTAGAATGTACGGTTTCAAAATAAGATATGTTCCATAGTA
TTTCAATCTCTAAAAGACTCAAAATGGCAACTACTATGTCCTCCAGACAA
AATCCCTCAACTGATGATAAACATCAAAACCGTAACAATGATCAACGGTA
GCGACGGAGGGAAAGAGTATTGTTTCTCTTCCAGGTAGCCCTGCGCGAAG
GCCGAGCCTTGTGGTGCAAGTGTCCTTTTCCACGTAGGCCTCTGTACTTC
TTACCTGCAGAAGTAAGACCACGGAGTTCCCTGTGCTTATGGACAGGATT
GCATAACCAATTAATTCTTGGGTCATTACGGATGGCATTATGAGCAGGAT
CAACCAAGATCACCTCAAAGTACTTATAAGTGGAGTCCTCATTGATCCAG
TAAGAATTGAGAACCCTAAGACCTCCCAACTTACGACCGGCACGCTCCTC
TGCAACAGACCTCTTGCTGCGCTGAAACTTCAGTTGAGTAACACCCTGGT
TTGTGGGTTTACCATACACAATGCCCTTGGGAACAGGCCTCTTCCGACCA
CCGCGCCTTACCCGCACACGATAAACAACATAACCCTGCTTGGCCTTGTA
ACCCAAGCGTCGAGCCTT
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