CX044014

Overview
NameCX044014
Unique NameCX044014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX044014 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAE (50S ribosomal protein L15e OS=Pyrobaculum aerophilum GN=rpl15e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 49/125 (39.20%), Postives = 63/125 (50.40%), Query Frame = -1 
Query:  347 KARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLC-NPVHKHRELRGLTSAGKK 718
            +AR+LGYKAKQ                         +P   GV  +   +S R VAEERA RK   L VLNSYW+ +D  Y+YFEVIL+D     I+NDP  + +C   V + R +R L    KK
Sbjct:   49 RARKLGYKAKQGVVVVRVRLMRGPFNRRRPDS--GRRPKRMGVYGITAWKSWRQVAEERAARKHPNLEVLNSYWVADDGIYRYFEVILIDCNLPTIKNDPLYSGICGREVPRRRIIRRLRERQKK 171
The following BLAST results are available for this feature:
BLAST of CX044014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL15E_PYRAE1.444e-1339.2050S ribosomal protein L15e OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14H02_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14H02-P4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044014 ID=CX044014; Name=CX044014; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTGACGAAACAAATACTCAACAAGACCTTAAACAG
AATGAGACATTTAAGGCTCTTATAATTCAAGGTAGACTCAAGAAACACAA
ATGTCTTAATTTAGAATGTACGGTTTCAAAATAAGATATGTTCCATAGTA
TTTCAATCTCTAAAAGACTCAAAATGGCAACTACTATGTCCTCCAGACAA
AATCCCTCAACTGATGATAAACATCAAAACCGTAACAATGATCAACGGTA
GCGACGGAGGGAAAGAGTATTGTTTCTCTTCCAGGTAGCCCTGCGCGAAG
GCCGAGCCTTGTGGTGCAAGTGTCCTTTTCCACGTAGGCCTCTGTACTTC
TTACCTGCAGAAGTAAGACCACGGAGTTCCCTGTGCTTATGGACAGGATT
GCATAACCAATTAATTCTTGGGTCATTACGGATGGCATTATGAGCAGGAT
CAACCAAGATCACCTCAAAGTACTTATAAGTGGAGTCCTCATTGATCCAG
TAAGAATTGAGAACCCTAAGACCTCCCAACTTACGACCGGCACGCTCCTC
TGCAACAGACCTCTTGCTGCGCTGAAACTTCAGTTGAGTAACACCCTGGT
TTGTGGGTTTACCATACACAATGCCCTTGGGAACAGGCCTCTTCCGACCA
CCGCGCCTTACCCGCACACGATAAACAACATAACCCTGCTTGGCCTTGTA
ACCCAAGCGTCGAGCCTT
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