CX043983

Overview
NameCX043983
Unique NameCX043983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_GEOUR (Elongation factor Tu OS=Geobacter uraniireducens (strain Rf4) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 84/273 (30.77%), Postives = 128/273 (46.89%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQ---IGNGYAPVLDCHTSHI 810
            PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P +    +   EGD     +  L       L++A+D+ I EP R  DKP  +P++DV+ I G GTV  GRVE G++K G  V       T  T V  VEM  + L E   GDN+G  ++ V  +D++RG V +              + ++     G+     NGY P     T+ +
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIIKGSALKALEGD-----TGELGEQAIMKLMEAVDSYIPEPVRAIDKPFLMPVEDVFSISGRGTVATGRVERGIVKVGEEVEIVGMKATAKTTVTGVEMFRKLLDEGRAGDNIGALLRGVKREDIERGQVLAKPGSITPHTKFKAEAYILTKEEGGRHTPFFNGYRPQFYFRTTDV 340          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 81/250 (32.40%), Postives = 125/250 (50.00%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK---PGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 747
            PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L +  +  ++VP +    +   EGD   E        K   L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK   P  ++       +T V  VEM  + L +A  GDN+G  ++ V+  +++RG V   +K         F +QV ++
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDAQWEE-------KIVELMNAVDEYIPTPQREVDKPFMMPVEDVFSITGRGTVATGRVERGTLKVGDPVEIIGLSDEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVL--AKPGSITPHTKFKAQVYVL 313          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP7 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 80/253 (31.62%), Postives = 124/253 (49.01%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-----DNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 747
            PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V  S  +      D    +  + DW  K   L+D +D  I  P+R  DKP  + ++DV+ I G GTV  GR+E G +K G    +V       +T V  VEM  + L+E L GDNVG  ++ V  ++++RG V   +K    +    F  +V ++
Sbjct:   83 PGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLAKQVGVPNLVVFLNKEDMVD---DEELLELVELEVRELLSEYEFPGDDIPIVKGSALKAVEALTDTPTIKKGDNDWVDKILALMDEVDAYIPTPERDIDKPFLMAIEDVFSISGRGTVATGRIERGKIKAGETVEIVGIKEKTKSTTVTGVEMFQKTLEEGLAGDNVGLLLRGVQKEEIERGMVI--AKPGSIKPHTQFEGEVYVL 323          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 88/273 (32.23%), Postives = 128/273 (46.89%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHI 810
            PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D           D +  EV   L + G+  +  P V  S  +     + +  +   K   L+  +D  I  P+RP+DK   +P++DV+ I G GTV  GRVETG LK G    +V          V  VEM  + L  AL GDN+G  ++ V  +D++RG V   +K         F  QV ++            NGY P     T+ +
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEYIVVFLNKADQVD---DPELIDLVEMEVRELLNEYGFPGDDTPIVVGSALKALQNPDDAEAIKPIKD--LMAEVDAYIPTPERPTDKAFLMPIEDVFTITGRGTVATGRVETGTLKVGDEVEIVGMKDEITKVVVTGVEMFRKILDSALAGDNIGALLRGVQREDIERGQVL--AKPGSITPHNKFVGQVYVLKKEEGGRHTPFFNGYRPQFYFRTTDV 341          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 86/273 (31.50%), Postives = 133/273 (48.72%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHI 810
            PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +SSY    G+  + +P +     +G  +   +   +W  K   L++A+DN I  P R  DKP  +P++DV+ I G GTV  GR+E GV+K    V       T +  V  +EM  + L +   GDN G  ++ V   +L+RG V   +K         F ++V I+            NGY P     T+ +
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVNVPSIVVFMNKVDIADPELIELVEMELRELLSSY----GFPGDDIPII-----QGSALGALNGEAEWVGKIEELMEAVDNYIPTPVRDVDKPFLMPVEDVFSISGRGTVGTGRIERGVIKINEEVELVGIRPTKKSVVTGIEMFRKLLDQGEAGDNAGLLLRGVNKDELERGMVI--AKPGSITPHTKFKAEVYILKKEEGGRHTPFFNGYRPQFYFRTTDV 337          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_CHLMU (Elongation factor Tu OS=Chlamydia muridarum GN=tuf PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 78/227 (34.36%), Postives = 118/227 (51.98%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 681
            PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D  + + ++   D +  E+S  L++ GY  +  P +    +   EGD                L+ A+D NI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K    V       T E  V  VEM  + L E   G+NVG  ++ +   D++RG V
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVFLNKIDMISEEDAEL-VDLVEMELSELLEEKGY--KGCPIIRGSALKALEGDAAYIEKVR-------ELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGLRDTKETIVTGVEMFRKELPEGRAGENVGLLLRGIGKNDVERGMV 292          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_CHAVU (Elongation factor Tu, chloroplastic OS=Chara vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 84/255 (32.94%), Postives = 126/255 (49.41%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS-----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 747
            PGH D+IKNMITG +Q D A+L++ +  G          QT+EH LLA  +GV  ++   NK D    +      D    EV   L    +  +KVP V  S       +    N       W  K   L+DA+D+ I  PKR  +KP  +P++DV+ I G GTV  GR+E G+LK G +V     GL  +++S     +EM    L++   G+N+G  ++ +  KD++RG V   ++         F +QV I+
Sbjct:   83 PGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTKEHILLAKQVGVPSIVVFLNKEDQVDDEEILQLVD---LEVRESLINYEFPGDKVPVVAGSALMALQALTEKPNTLRGENKWVDKIYELMDAVDSYIPTPKRDIEKPFLMPIEDVFSIQGRGTVATGRIERGILKLGDIVEL--IGLNEKIRSTVVTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIERGMVI--AQPGTIEPHTRFEAQVYIL 323          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU_CAMLR (Elongation factor Tu OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 86/284 (30.28%), Postives = 134/284 (47.18%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHI--AVKFSE 828
            PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D        A   E+V+ E+   L    +  +  P +  S  +     +   + +W K   +LD +    D I  P R +DK   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +D++RG V +  K        +F ++V I+N           N Y P     T+ +  A+K +E
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFMNKADMV----DDAELLELVEMEIRELLSSYDFPGDDTPIISGSALQALEEAKAGQDGEWSK--KILDLMAAVDDYIPTPARDTDKDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIRDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEDVERGMVLAKPKS--ITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGAIKLAE 351          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPS (Elongation factor Tu 2 OS=Yersinia pseudotuberculosis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 87/253 (34.39%), Postives = 125/253 (49.41%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 750
            PGH D++KNMITG +Q D A+L++ +T G          QTREH LL   +GV  +I   NK D    +      +  V+E+ S     G +   V    +   EG+      +IE +  LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGVPYIIVFMNKCDMVDDEELLELVEMEVRELLSAYDFPGDDLPVVRGSALKALEGEAEWEAKIIELAGYLDSY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILS 313          
BLAST of CX043983 vs. ExPASy Swiss-Prot
Match: EFTU2_YERPN (Elongation factor Tu 2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.123e-25
Identity = 87/253 (34.39%), Postives = 125/253 (49.41%), Query Frame = 1
Query:   19 PGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGD-----NMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 750
            PGH D++KNMITG +Q D A+L++ +T G          QTREH LL   +GV  +I   NK D    +      +  V+E+ S     G +   V    +   EG+      +IE +  LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L E   G+NVG  ++ +  +D++RG V   +K    +    F S+V I++
Sbjct:   83 PGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGVPYIIVFMNKCDMVDDEELLELVEMEVRELLSAYDFPGDDLPVVRGSALKALEGEAEWEAKIIELAGYLDSY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIVKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREDIERGQVL--AKPGSIKPHTTFESEVYILS 313          
The following BLAST results are available for this feature:
BLAST of CX043983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GEOUR2.123e-2530.77Elongation factor Tu OS=Geobacter uraniireducens (... [more]
EFTU_GEOTN2.123e-2532.40Elongation factor Tu OS=Geobacillus thermodenitrif... [more]
EFTU_CYAP72.123e-2531.62Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CLOAB2.123e-2532.23Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_CHLT32.123e-2531.50Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_CHLMU2.123e-2534.36Elongation factor Tu OS=Chlamydia muridarum GN=tuf... [more]
EFTU_CHAVU2.123e-2532.94Elongation factor Tu, chloroplastic OS=Chara vulga... [more]
EFTU_CAMLR2.123e-2530.28Elongation factor Tu OS=Campylobacter lari (strain... [more]
EFTU2_YERPS2.123e-2534.39Elongation factor Tu 2 OS=Yersinia pseudotuberculo... [more]
EFTU2_YERPN2.123e-2534.39Elongation factor Tu 2 OS=Yersinia pestis bv. Anti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14F09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043983 ID=CX043983; Name=CX043983; organism=Citrus sinensis; type=EST; length=832bp
TTTGGGTACCGCGGCCCCCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGACGCTC
TTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTG
CCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGGG
TCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCC
CCTCTGGATTGACAACTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCT
CTGCAGGAGGCCCTTCCGGGTGACAATGTTGGTTTCAACGTGAAGAACGT
TGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATG
ATCCGGCCAGGGAAGCTGCCAACTTCACCTCACAGGTCATCATCATGAAC
CACCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACAC
CTCCCACATTGCCGTCAAGTTTTCTGAGCTCG
back to top