CX043979

Overview
NameCX043979
Unique NameCX043979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DIACI (40S ribosomal protein SA OS=Diaphorina citri PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.335e-74
Identity = 132/198 (66.67%), Postives = 160/198 (80.81%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE D+  ML A+ H+G++N D+QME+YV+KRRNDG++I+NL +TWEKL +AAR IVAIE+P D+ V S+RP GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EAA  NIP IAFC+T+SP+R+VDI IP NNK  HSIG ++WLLAR VL+ RGTI    KWDV+VDLFFYR
Sbjct:    8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGTIPREPKWDVVVDLFFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_PINFU (40S ribosomal protein SA OS=Pinctada fucata PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.703e-74
Identity = 131/198 (66.16%), Postives = 155/198 (78.28%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            L+ KE DI   LA   HLG  N DFQME+YV+KR+ DG+YIINL +TWEKL +AAR I AIENP D+ V SARPYGQRAVLKFA  T A  IAGR TPGTFTNQ+Q +F EPRLL++TDPR DHQP+ EA+  NIP IA C+TDSP+RYVD+ IP NNK  HS+G ++WLLAR VL++RGTI   H W+VMVDL+FYR
Sbjct:    8 LALKEEDITKFLACSTHLGATNVDFQMEQYVYKRKPDGVYIINLRRTWEKLLLAARAIAAIENPADVCVISARPYGQRAVLKFASATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRIDHQPVTEASYVNIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLRGTISRDHPWEVMVDLYFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DROYA (40S ribosomal protein SA OS=Drosophila yakuba GN=sta PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DROTE (40S ribosomal protein SA OS=Drosophila teissieri GN=sta PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DROSI (40S ribosomal protein SA OS=Drosophila simulans GN=sta PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DROSE (40S ribosomal protein SA OS=Drosophila sechellia GN=sta PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DROME (40S ribosomal protein SA OS=Drosophila melanogaster GN=sta PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:   51 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 248          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_DROER (40S ribosomal protein SA OS=Drosophila erecta GN=sta PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.267e-73
Identity = 134/198 (67.68%), Postives = 158/198 (79.80%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            LS KE DI  ML A  HLG++N +FQME+YV+KRR DG+ I+NLGKTWEKLQ+AAR IVAI+NP DI V S+RP GQRAVLKFAKYT    IAGR TPG FTNQ+Q +F EPRLL++TDP TDHQPI EA+  NIP IAF +TDSP+RY+DI IP NNK  HSIG ++WLLAR VL++RGTI    +W V+VDLFFYR
Sbjct:    8 LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRAVLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIAFTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_NEMVE (40S ribosomal protein SA OS=Nematostella vectensis GN=v1g198553 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.162e-73
Identity = 130/198 (65.66%), Postives = 157/198 (79.29%), Query Frame = 3
Query:  105 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 698
            L  KE D+   LAA VHLG  NCDFQME YV+KR++DG+ IIN+ KTWEKL +AAR+IV IENP D+ V SARPYGQRA+LK+A +T A  IAGR TPGTFTNQ+Q +F EPRLLI+ DPR DHQP+ EA+  NIP IAFC+TDSP+R+VD+ IP NNKG HSIG +FWLLAR VL+MRG+I     W++M DL+FYR
Sbjct:    8 LQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYR 205          
BLAST of CX043979 vs. ExPASy Swiss-Prot
Match: RSSA_COPC7 (40S ribosomal protein S0 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.162e-73
Identity = 133/206 (64.56%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   84 TATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 698
            T+  P  LS  E DIQ++LAA+ H+GTKNCD QME YV+KRR DGI+I+N+GKTWEKL +AAR+I A+ENP DI V SARPYG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++I+TDPR DHQ I+EA+  NIP IA CDTD+P+++VD+ IP NNK +HSIG ++WLLAR VL++RGTI R    W+VMVD+FFYR
Sbjct:    2 TSKLPSILSATEEDIQLLLAAQCHIGTKNCDKQMEPYVWKRRADGIHILNIGKTWEKLVLAARIIAAVENPNDICVISARPYGHRAVLKFAANTGAQAIAGRFTPGSFTNYITRSFKEPRIIIVTDPRVDHQAIREASYVNIPVIALCDTDAPLQFVDVAIPTNNKTRHSIGLIWWLLAREVLRLRGTIPRTPDGWNVMVDMFFYR 207          
The following BLAST results are available for this feature:
BLAST of CX043979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_DIACI3.335e-7466.6740S ribosomal protein SA OS=Diaphorina citri PE=2 ... [more]
RSSA_PINFU9.703e-7466.1640S ribosomal protein SA OS=Pinctada fucata PE=2 S... [more]
RSSA_DROYA1.267e-7367.6840S ribosomal protein SA OS=Drosophila yakuba GN=s... [more]
RSSA_DROTE1.267e-7367.6840S ribosomal protein SA OS=Drosophila teissieri G... [more]
RSSA_DROSI1.267e-7367.6840S ribosomal protein SA OS=Drosophila simulans GN... [more]
RSSA_DROSE1.267e-7367.6840S ribosomal protein SA OS=Drosophila sechellia G... [more]
RSSA_DROME1.267e-7367.6840S ribosomal protein SA OS=Drosophila melanogaste... [more]
RSSA_DROER1.267e-7367.6840S ribosomal protein SA OS=Drosophila erecta GN=s... [more]
RSSA_NEMVE2.162e-7365.6640S ribosomal protein SA OS=Nematostella vectensis... [more]
RSSA_COPC72.162e-7364.5640S ribosomal protein S0 OS=Coprinopsis cinerea (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14F07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14F07-L14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043979 ID=CX043979; Name=CX043979; organism=Citrus sinensis; type=EST; length=854bp
TACCGGGGCCCCAGAAGTCTCCGTCGGTACCACGAGTCTCAGCTTTCTCT
CGCAGGTTTTAAGAAATAAAGATGGCGACCGGAACAGCAACGGCCCCGAG
GCAGCTCTCTCAGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAG
TTCATTTGGGTACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTC
AAGCGCCGAAACGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGA
GAAGCTACAGATGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGG
ACATTATTGTCCAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAG
TTTGCAAAGTACACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGG
TACATTTACCAATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCA
TTCTAACAGATCCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTT
GGAAACATTCCCACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTA
TGTTGATATTGGCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGT
GTCTCTTCTGGCTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATT
CGTCCTGGCCACAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGGGA
GCCAGAAGAAACCAAGCAGGCTGAAGAAGAAGAAACTGCTGCTATTGATT
ATGCTACAGCAGAGTACAACACGAATCTTACCAGTGGTGATCAATGGCCT
TCCCAAATTGCTGATGGTGGGTGGGCGGGTGGTGAAGTTCAGAAGCCCAT
TCCT
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