CX043960

Overview
NameCX043960
Unique NameCX043960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO1_HUMAN (Small ubiquitin-related modifier 1 OS=Homo sapiens GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  195 MSGVTNTPQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 473
            MS     P  ED     +  +I  K    D +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R     TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO1_CHICK (Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  195 MSGVTNTPQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 473
            MS     P  ED     +  +I  K    D +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R     TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSAEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRITDNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO1_BOVIN (Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  195 MSGVTNTPQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 473
            MS     P  ED     +  +I  K    D +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R     TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO1_CERNI (Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  195 MSGVTNTPQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 473
            MS     P  ED     +  +I  K    D +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R     TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  195 KDGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 401
            +D +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R    QTP EL ME+ D I+    QTGG
Sbjct:   30 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  195 KDGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 401
            +D +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R    QTP EL ME+ D I+    QTGG
Sbjct:   30 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = -3
Query:  195 EEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGG 446
            ++  +  D + +I  K    D NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR   + TP  LEMED D I+    Q GG
Sbjct:    3 DDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  192 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 452
            P+E  K  N+   HIN K    DG+   F+I+R T L KLM AYC+RQ + +  I F  DG+      TP +LE+ED D ID +  QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGGV 94          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO4_HUMAN (Small ubiquitin-related modifier 4 OS=Homo sapiens GN=SUMO4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  192 PQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 452
            P EE K  N+   HIN K    DG+ V F+IKR T L KLM AYC+ + + +  I F F G+   G   P +LEMED D ID     TGG+
Sbjct:    6 PTEEVKTENNN--HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGV 94          
BLAST of CX043960 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = -3
Query:  192 MSGVTNTPQEEDKKPNDQSAHINFK----DGNEVFFRIKRSTQLKKLMNAYCDRQFVELNSIAFLFDGRRFRGEQTPDELEMEDGDEIDAMLHQTGGM 473
            MS     P  +D        +I  K    D +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R     TP EL MED D I+    QTGG+
Sbjct:    1 MSDTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGGL 98          
The following BLAST results are available for this feature:
BLAST of CX043960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_HUMAN1.433e-1341.24Small ubiquitin-related modifier 1 OS=Homo sapiens... [more]
SUMO1_CHICK1.433e-1341.24Small ubiquitin-related modifier 1 OS=Gallus gallu... [more]
SUMO1_BOVIN1.433e-1341.24Small ubiquitin-related modifier 1 OS=Bos taurus G... [more]
SUMO1_CERNI1.871e-1341.24Small ubiquitin-related modifier 1 OS=Cervus nippo... [more]
SUMO1_XENTR4.168e-1349.28Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA4.168e-1349.28Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL9.286e-1343.18Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG2.069e-1243.96Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO4_HUMAN3.529e-1245.05Small ubiquitin-related modifier 4 OS=Homo sapiens... [more]
SUMO1_ONCMY4.609e-1237.76Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E07-J14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043960 ID=CX043960; Name=CX043960; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTTTTTTTTTCTTTTTTCTTTTTTCTGGAAAAAAGAGCTACAT
ACTTAGGTAACACAAACATAATGGTGTAAATCACAAATACACAATCTTGA
GCCTCTGCATAACTTACATCCATCCATTAATAGTTTTACATTAATACTAC
TAATAAGCTCTCAAACGAGTATTACATAATTAAAACATCAGCATTCCTCC
GGTTTGGTGCAGCATGGCATCAATCTCATCACCATCTTCCATTTCCAGCT
CATCAGGGGTTTGCTCTCCTCGAAAACGGCGACCATCAAACAAAAAGGCA
ATTGAGTTCAGCTCCACAAATTGTCTATCACAGTATGCATTCATAAGCTT
CTTTAGTTGGGTGCTTCGTTTGATCCTGAAAAAAACCTCATTCCCATCTT
TGAAATTGATGTGAGCCGATTGATCGTTGGGCTTCTTATCTTCCTCTTGA
GGAGTGTTCGTGACGCCTGACATTCTCTCTTCTGCTTCGTCTCTCACACT
CTCTCTCTCTCGCTATCTCTTGGTTGGGAGCCTGTTGAATTGCAACAGTA
AAAAAGGGACTGTATTGTTTCGAGTTGTCTCAAAAAATGGAAGTCAGGAT
AGGAATGATAAAAAATGGGCAACCTGGAGGCAAAGCTCAGTTGACGGGAA
TGTATATATCAAATTTGAAATTCTGCTGAACGAGGGTGGTTCTCAACCAA
AGGTCTCAACATCAGCGG
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