CX043956

Overview
NameCX043956
Unique NameCX043956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2F2_RAT (Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = -1
Query:  320 AVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIIS-GVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVP 781
            A   L + P   A+++EE D +   +S+   LE  D  SMP+T  V++E  R A++I   +  R + D   +G+ IPKG  V      VH D D FK  + FNP  + + + +      F PF  G RLC G  LAR+EL ++L  ++  F+  P
Sbjct:  310 AFLILMKYPKVQARVQEEIDCV-VGRSRMPTLE--DRASMPYTDAVIHEVQRFADVIPMNLPHRVIRDTPFRGFLIPKGTDVITLLNTVHYDSDQFKTPQEFNPEHFLDANQSFKKSPAFMPFSAGRRLCLGEPLARMELFIYLTSILQNFTLHP 461          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP26A_DANRE (Cytochrome P450 26A1 OS=Danio rerio GN=cyp26a1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 42/114 (36.84%), Postives = 58/114 (50.88%), Query Frame = -1
Query:  323 MPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWV 664
            + +T CV+ ETLR+   + G FR A+    + GY IPKGW V  S    H   D F +   F P R+ +          + PFGGG R+C G E A+V L +FL  L    +W+
Sbjct:  349 LKYTGCVIKETLRINPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADVFPNKEEFQPERFMSKGLEDGSRFNYIPFGGGSRMCVGKEFAKVLLKIFLVELTQHCNWI 462          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP17A_ICTPU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.392e-15
Identity = 54/185 (29.19%), Postives = 95/185 (51.35%), Query Frame = -1
Query:  251 IMTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRR-AMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGAT--SPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSW-VPAEQDKLVFFPTTRTQKRYPIIVQ 793
            ++  ++ +L   P    +++EE D   AK  +    + ND  ++P+ +  + E LR+  +   +    A++D NI  YT+ KG RV  +  ++H D   +K+   FNP R+ N  G +   P   + PFG G R+C G  LA++EL +FL  ++ RF+  VP  Q      P    Q ++ +++Q
Sbjct:  313 VLKWSILYLIHHPQVQRKIQEELD---AKIGRDRHPQVNDRGNLPYLEATIREVLRIRPVSPLLIPHVALSDANIGEYTVQKGTRVIVNLWSLHHDEKEWKNPELFNPERFLNEEGNSLCCPSLSYLPFGAGVRVCLGEALAKLELFLFLSWILQRFTLEVPGGQ------PLPELQGKFRVVLQ 488          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: C36A1_CAEEL (Probable cytochrome P450 CYP36A1 OS=Caenorhabditis elegans GN=cyp-36A1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = -1
Query:  326 IMTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRA-MTDI-NIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSW 793
            ++  A  +L   P      K  H+E+     ++  +  +D K +P+T   + E  R+  ++   F R  +TD+ + +GY +  G RV A F++VH+D  HF D   FNP R+ N+ G     +   PF  G R C G  LAR+E+ ++   L+  F W
Sbjct:  309 VLRFAFLYLVNNP---ETQKRIHEELDRNVGRERQVVMDDQKHLPYTCAFLQEVYRLGYVLPVNFLRCTLTDVEDCEGYRLNAGTRVIAQFQSVHVDKKHFPDPEHFNPDRFLNSRGEYIRDDRVNPFSMGKRSCLGENLARMEVFLYFCTLMQNFEW 463          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP26A_MOUSE (Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = -1
Query:  326 TLAVKFLTETPLALAQLKEEHDE--IRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSW 787
            T  + +L   P  L +++EE     +  K ++   L+    + + +  CV+ ETLR+   + G FR A+    + GY IPKGW V  S    H   D F +   FNP R+       +    F PFGGG R C G E A++ L +F   L     W
Sbjct:  310 TSLITYLGLYPHVLQKVREEIKSKGLLCKSNQDNKLDMETLEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVADIFTNKEEFNPDRFIVPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHCDW 465          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP26A_HUMAN (Cytochrome P450 26A1 OS=Homo sapiens GN=CYP26A1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.550e-14
Identity = 48/156 (30.77%), Postives = 72/156 (46.15%), Query Frame = -1
Query:  326 TLAVKFLTETPLALAQLKEEHDE--IRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSW 787
            T  + +L   P  L +++EE     +  K ++   L+    + + +  CV+ ETLR+   + G FR A+    + GY IPKGW V  S    H   + F +   FNP R+       +    F PFGGG R C G E A++ L +F   L     W
Sbjct:  310 TSLITYLGLYPHVLQKVREELKSKGLLCKSNQDNKLDMEILEQLKYIGCVIKETLRLNPPVPGGFRVALKTFELNGYQIPKGWNVIYSICDTHDVAEIFTNKEEFNPDRFMLPHPEDASRFSFIPFGGGLRSCVGKEFAKILLKIFTVELARHCDW 465          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.645e-14
Identity = 51/165 (30.91%), Postives = 82/165 (49.70%), Query Frame = -1
Query:  302 IMTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRW-QNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEQDKL 793
            I++  V  L   P    +L+EE DE    K+   P  ++   +M +   V+NETLR+  I + + R    D+ I G  IPKG  V      +H D  H+ +   F P R+ + N G+  P  V+ PFG GPR C G   A + + + L  ++  FS+ P ++ ++
Sbjct:  314 ILSFTVYSLATHPDIQKKLQEEIDEALPNKA---PPTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHWPEPEEFQPERFSKENKGSIDPY-VYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQPCKETQI 474          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2F3_CAPHI (Cytochrome P450 2F3 OS=Capra hircus GN=CYP2F3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 49/155 (31.61%), Postives = 75/155 (48.39%), Query Frame = -1
Query:  320 AVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIIS-GVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVP 781
            A + L + P    +++EE D +  ++         D   MP+T  V++E  R A+II   +  R   D N +G+TIP+G  V      VH D   F   + FNP  + + + +      F PF  G RLC G  LAR+EL ++L  ++  FS  P
Sbjct:  310 AFRLLMKYPEVQVRVQEEIDRVVGRERLPTV---EDRAEMPYTDAVIHEVQRFADIIPMSLPHRVTRDTNFRGFTIPRGTDVITLLNTVHYDPSQFLKPKEFNPEHFLDANMSFKKSPAFMPFSAGRRLCLGEALARMELFLYLTAILQSFSLQP 461          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP17A_ORYLA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzias latipes GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 50/165 (30.30%), Postives = 87/165 (52.73%), Query Frame = -1
Query:  311 IMTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRR-AMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGA--TSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSW-VPAEQ 793
            ++  A+ +L   P    Q++EE D    K     P + +D  S+PF +  + E LR+  +   +    A++D ++  +T+ KG RV  +  ++H D   + +   FNP R+ +  G+  T P + + PFG G R+C G  LA++EL +FL  ++ RF+  VP  Q
Sbjct:  319 VLKWAITYLIHYPEVQKQIQEELDR---KVGVDRPPQLSDRGSLPFLEATIREVLRIRPVAPLLIPHVALSDTSLGDFTVRKGTRVVINLWSLHHDEKEWTNPDLFNPGRFLSADGSSLTLPSSSYLPFGAGLRVCLGEALAKMELFLFLSWILQRFTLSVPPSQ 480          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2J3_RAT (Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = -1
Query:  302 DYKSMPFTQCVVNETLRVANIIS-GVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEQDKL 676
            D  SMP+T  V++E  R+ NII   V R    D  + G+ +PKG  +  +  A+H D   +    +FNP  +  N G       F PF  G R C G +LAR EL +F+  L+ +F++ P   +KL
Sbjct:  355 DRDSMPYTNAVIHEVQRIGNIIPFNVPREVAVDTYLAGFNLPKGTMILTNLTALHRDPKEWATPDTFNPEHFLEN-GQFKKRESFLPFSMGKRACLGEQLARSELFIFITSLIQKFTFKPPVNEKL 479          
The following BLAST results are available for this feature:
BLAST of CX043956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
CP2F2_RAT8.221e-1634.19Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2... [more]
CP26A_DANRE2.392e-1536.84Cytochrome P450 26A1 OS=Danio rerio GN=cyp26a1 PE=... [more]
CP17A_ICTPU2.392e-1529.19Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalu... [more]
C36A1_CAEEL3.124e-1530.38Probable cytochrome P450 CYP36A1 OS=Caenorhabditis... [more]
CP26A_MOUSE6.960e-1531.41Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE... [more]
CP26A_HUMAN1.550e-1430.77Cytochrome P450 26A1 OS=Homo sapiens GN=CYP26A1 PE... [more]
CP3AG_MOUSE2.645e-1430.91Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
CP2F3_CAPHI3.454e-1431.61Cytochrome P450 2F3 OS=Capra hircus GN=CYP2F3 PE=2... [more]
CP17A_ORYLA3.454e-1430.30Steroid 17-alpha-hydroxylase/17,20 lyase OS=Oryzia... [more]
CP2J3_RAT4.511e-1434.92Cytochrome P450 2J3 OS=Rattus norvegicus GN=Cyp2j3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E05-J10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043956 ID=CX043956; Name=CX043956; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTCACAAAAAGGAAATAAAATGATTACTATTAATC
ATTACTACAGCAGCTTGATTAAAACATATGAACATGATAATTTACATAAA
CTATTCTGCTAACATAAAATTTATTAAATTTGACATAAATAGTTGATTAC
ATTAGATGATACATCATCTCCTCTAGCATTCTCTTACTCCATCCTTCCTT
GCTTGCTTCTCTCTTTATTCTTTACATGGCTTTTAATTCTCATTTCGACG
CTGCACAATGATGGGGTACCTCTTCTGCGTTCTTGTTGTTGGAAAGAATA
CCAACTTATCTTGCTCAGCTGGTACCCAGCTGAAACGAGTAACTAAGTGG
TGAAGAAAAACAGAGAGCTCAACCCTCGCAAGTTCATATCCAGGGCACAG
CCGTGGCCCACCGCCGAACGGAGTGAATACATTTACTGGACTCGTTGCTC
CTGAATTATTCTGCCATCTCCATGGGTTGAAAGAGCGAGCATCTTTGAAA
TGGTCATGGTCTAAATGTACAGCCCTGAATGATGCAAAAACTCTCCACCC
CTTTGGTATAGTGTAACCTTTAATGTTGATATCTGTCATTGCTCTCCTGA
AAACCCCACTGATTATGTTGGCCACTCTCAGAGTTTCATTGACAACACAT
TGAGTGAATGGCATTGACTTATAATCATTCCATTCGAGAGGCTCTTGCTT
GCTCTTCTTTGCCCTTATCTCATCATGCTCCTCCTTTAGTTGAGCCAAAG
CTAGAGGAGTCTCAGTGAGGAACTTAACAGCAAGAGTCATGAT
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