CX043956

Overview
NameCX043956
Unique NameCX043956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2C8_HUMAN (Cytochrome P450 2C8 OS=Homo sapiens GN=CYP2C8 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = -1
Query:  329 LTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANII-SGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFS 769
            L + P   A+++EE D +  +   + P    D   MP+T  VV+E  R ++++ +GV     TD   + Y IPKG  + A   +V  D   F +   F+P  + + +G     + F PF  G R+C G  LAR+EL +FL  ++  F+
Sbjct:  313 LLKHPEVTAKVQEEIDHVIGRH--RSPC-MQDRSHMPYTDAVVHEIQRYSDLVPTGVPHAVTTDTKFRNYLIPKGTTIMALLTSVLHDDKEFPNPNIFDPGHFLDKNGNFKKSDYFMPFSAGKRICAGEGLARMELFLFLTTILQNFN 457          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2A9_MESAU (Cytochrome P450 2A9 OS=Mesocricetus auratus GN=CYP2A9 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = -1
Query:  332 HDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIIS-GVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRF 727
            H+EI     +    ++ D   MP+T+ V+NE  R AN+   G+ R+ + +   +G+ +PK   V+    ++  D   F   + FNP  + ++ G    +  F PF  G R C G  LAR+EL +FL  ++  F
Sbjct:  327 HEEIDRVIGRNRQPQFEDRMKMPYTEAVINEIQRFANLAPLGIPRKTIKNTTFRGFFLPKDTDVYPILGSLLTDPKFFTSPKHFNPQNFLDDRGQLKKIAAFVPFSVGKRFCLGDGLARMELFLFLTTILQNF 459          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP254_MOUSE (Cytochrome P450 2C54 OS=Mus musculus GN=Cyp2c54 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 46/160 (28.75%), Postives = 76/160 (47.50%), Query Frame = -1
Query:  305 AVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMT-DINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEQDK 781
            A+  L + P   A+++EE + +  K  +       D   MP+T  +++E  R  +++       +T DI  + Y IPKG  V  S  +V  D   F +   F+P  + + +G     + F PF  G R+C G  LAR+EL +FL  ++  F+  P    K
Sbjct:  309 ALLLLLKYPHVTAKVQEEIEHVIGKHRRPC---MQDRSHMPYTNAMIHEVQRFIDLVPNNLPHEVTCDIKFRNYFIPKGTTVITSLSSVLRDSKEFPNPEKFDPGHFLDENGKFKKSDYFMPFSTGKRICAGEGLARMELFLFLTSILQNFNLKPLVHPK 465          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 46/164 (28.05%), Postives = 78/164 (47.56%), Query Frame = -1
Query:  302 IMTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEQDKL 793
            +++  +  L   P    +L+EE D +   K+   P  ++    M +   VVNETLR+  I   + R    D+ I G  IPKG  V     A+H D  ++ +   F P R+   +       ++TPFG GPR C G   A + + + L  ++  FS+ P ++ ++
Sbjct:  313 VLSFIMYELATHPDVQQKLQEEIDAVLPNKA---PPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQI 473          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2F5_GORGO (Cytochrome P450 2F5 OS=Gorilla gorilla gorilla GN=CYP2F5 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = -1
Query:  320 LTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIIS-GVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVP 769
            L + P   A+++EE D +   +++   L+  D  +MP+T  V++E  R A+II   +  R   D   +G+ IPKG  +      VH D   F   + FNP  + + + +      F PF  G RLC G  LAR+EL ++L  ++  FS  P
Sbjct:  314 LMKYPKVQARVQEEIDLV-VGRARLPALK--DRAAMPYTDAVIHEVQRFADIIPMSLPHRVTRDTAFRGFLIPKGTDIITLLNTVHYDPSQFLTPQEFNPEHFLDANQSFKKSPAFMPFSAGRRLCLGESLARMELFLYLTAILQSFSLQP 461          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2CN_RAT (Cytochrome P450 2C23 OS=Rattus norvegicus GN=Cyp2c23 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 40/134 (29.85%), Postives = 63/134 (47.01%), Query Frame = -1
Query:  329 HDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMT-DINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFS 727
            H+E+     + +P    D   +P+T  V++E  R   ++      A+  D   + Y IPKG  V     +V LD   F +   F+P  + + +G     + F PF  G R C G  LAR+EL +F   L+ +FS
Sbjct:  328 HEELDRVIGRHQPPSMKDKMKLPYTDAVLHEIQRYITLLPSSLPHAVVQDTKFRDYVIPKGTTVLPMLSSVMLDQKEFANPEKFDPGHFLDKNGCFKKTDYFVPFSLGKRACVGESLARMELFLFFTTLLQKFS 461          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 50/164 (30.49%), Postives = 81/164 (49.39%), Query Frame = -1
Query:  302 MTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRW-QNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEQDKL 790
            ++  + FL   P    +L+EE D     K+   P  ++    M +   V+NETLR+  I + + R    DI + G  IPKG  V     A+H D  H+     F+P R+ + N G+  P  V+ PFG GPR C G   A + + + L  ++  FS+ P ++ ++
Sbjct:  315 LSFVLYFLATHPDIQKKLQEEIDGALPSKA---PPTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHWPKPEEFHPERFSKENKGSIDPY-VYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQPCKETQI 474          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP2CK_MACFA (Cytochrome P450 2C20 OS=Macaca fascicularis GN=CYP2C20 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = -1
Query:  329 LTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANII-SGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFS 769
            L + P   A+++EE D +  +   + P    D   MP+T  V++E  R  +++ +GV     TDI  + Y IPKG  +     +V  D   F + + F+P  + + +G     + F PF  G R+C G  LAR+EL +FL  ++  F+
Sbjct:  313 LLKHPEVTAKVQEEIDHVIGRH--RSPC-MQDRSHMPYTDAVIHEIQRYIDLVPTGVPHAVTTDIKFRNYLIPKGTIIITLLTSVLHDDKEFPNPKIFDPGHFLDENGNFKKSDYFMPFSAGKRICAGEGLARMELFLFLTTILQNFN 457          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP242_PIG (Cytochrome P450 2C42 (Fragment) OS=Sus scrofa GN=CYP2C42 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 47/155 (30.32%), Postives = 75/155 (48.39%), Query Frame = -1
Query:  329 MTLAVKFLTETPLALAQLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMT-DINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRWQNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFS 790
            M   +  L + P   A+++EE D +  +          D   MP+T  VV+E  R  +++      A+T DI  + Y IPKG  +  S  +V  D   F +   F+P  + + SG     + F PF  G R+C G  LAR+EL +FL  ++ +F+
Sbjct:  143 MRYGLLLLLKHPEVTAKVQEEIDRVIGR---HRSACMQDRSHMPYTDAVVHEIQRYIDLVPTNLPHAVTCDIKFRNYLIPKGTTILTSLTSVLYDCKAFPNPEVFDPGHFLDESGNFKKSDYFMPFSTGKRICVGEGLARMELFLFLTTILQKFN 294          
BLAST of CX043956 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 46/148 (31.08%), Postives = 76/148 (51.35%), Query Frame = -1
Query:  302 QLKEEHDEIRAKKSKQEPLEWNDYKSMPFTQCVVNETLRVANIISGVFRRAMTDINIKGYTIPKGWRVFASFRAVHLDHDHFKDARSFNPWRW-QNNSGATSPVNVFTPFGGGPRLCPGYELARVELSVFLHHLVTRFSWVPAEQDKL 742
            +L+EE DE    K+   P  ++    M +   V+NETLR+  I + + R    D+ + G  IPKG  V     A+H D  H+ +   F P R+ + N G+  P  ++ PFG GPR C G   A + + + L  ++  FS+ P ++ ++
Sbjct:  331 KLQEEIDETLPNKA---PPTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWPEPEEFQPERFSKENKGSIDPY-LYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQPCQETQI 474          
The following BLAST results are available for this feature:
BLAST of CX043956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
CP2C8_HUMAN8.508e-1331.08Cytochrome P450 2C8 OS=Homo sapiens GN=CYP2C8 PE=1... [more]
CP2A9_MESAU8.508e-1330.08Cytochrome P450 2A9 OS=Mesocricetus auratus GN=CYP... [more]
CP254_MOUSE8.508e-1328.75Cytochrome P450 2C54 OS=Mus musculus GN=Cyp2c54 PE... [more]
CP3A4_HUMAN1.111e-1228.05Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP2F5_GORGO1.111e-1231.79Cytochrome P450 2F5 OS=Gorilla gorilla gorilla GN=... [more]
CP2CN_RAT1.111e-1229.85Cytochrome P450 2C23 OS=Rattus norvegicus GN=Cyp2c... [more]
CP3A2_RAT1.451e-1230.49Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP2CK_MACFA1.451e-1230.41Cytochrome P450 2C20 OS=Macaca fascicularis GN=CYP... [more]
CP242_PIG1.451e-1230.32Cytochrome P450 2C42 (Fragment) OS=Sus scrofa GN=C... [more]
CP341_MOUSE1.895e-1231.08Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14E05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E05-J10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043956 ID=CX043956; Name=CX043956; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTCACAAAAAGGAAATAAAATGATTACTATTAATC
ATTACTACAGCAGCTTGATTAAAACATATGAACATGATAATTTACATAAA
CTATTCTGCTAACATAAAATTTATTAAATTTGACATAAATAGTTGATTAC
ATTAGATGATACATCATCTCCTCTAGCATTCTCTTACTCCATCCTTCCTT
GCTTGCTTCTCTCTTTATTCTTTACATGGCTTTTAATTCTCATTTCGACG
CTGCACAATGATGGGGTACCTCTTCTGCGTTCTTGTTGTTGGAAAGAATA
CCAACTTATCTTGCTCAGCTGGTACCCAGCTGAAACGAGTAACTAAGTGG
TGAAGAAAAACAGAGAGCTCAACCCTCGCAAGTTCATATCCAGGGCACAG
CCGTGGCCCACCGCCGAACGGAGTGAATACATTTACTGGACTCGTTGCTC
CTGAATTATTCTGCCATCTCCATGGGTTGAAAGAGCGAGCATCTTTGAAA
TGGTCATGGTCTAAATGTACAGCCCTGAATGATGCAAAAACTCTCCACCC
CTTTGGTATAGTGTAACCTTTAATGTTGATATCTGTCATTGCTCTCCTGA
AAACCCCACTGATTATGTTGGCCACTCTCAGAGTTTCATTGACAACACAT
TGAGTGAATGGCATTGACTTATAATCATTCCATTCGAGAGGCTCTTGCTT
GCTCTTCTTTGCCCTTATCTCATCATGCTCCTCCTTTAGTTGAGCCAAAG
CTAGAGGAGTCTCAGTGAGGAACTTAACAGCAAGAGTCATGAT
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