CX043952

Overview
NameCX043952
Unique NameCX043952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = -3
Query:  137 PEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFSKRFSTVLDDNSPLHQL 715
            P++ R+    Y      +A  +  LL   LGL+ +  +        ++   YYPP P P  TLG   H D   +T+LL   + GL++ +   W+ VQP+   LV+N G  L++++N   K+V+HR   +   PR+SV  F +  +  +    GP +E  S +NPP YR     E+  KR   V++ +S ++Q+
Sbjct:  141 PQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPGAVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCV---VGPAEEFVSEDNPPRYRTLTVGEF--KRKHNVVNLDSSINQI 328          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = -3
Query:  206 YIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDF 685
            Y   +++L+  + E+L  +LG+   H        + I+   YYPPC +P  TLG   H DP+ LTIL QD +GGLQV  + +W  ++P     VVNIGD    +SN ++KS  HR V +   PR S+  F      E+ K   P   L  A NP  Y DF
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLC---PEMDKVVAPPGTLVDASNPRAYPDF 323          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 68/185 (36.76%), Postives = 93/185 (50.27%), Query Frame = -3
Query:  191 PNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEY-----ILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDN-QWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEY 727
            P  +   C D   EY +++ KLA  L  L   +LG+  E +       +       L   +YP CP+PD  +G   H+D + LTIL Q+   GLQVF D+  WV V P  G LVVN+GD   I+SN  FKSV HR   +    R+SV  F  G  ++I  S  P+ +L S    P+Y+     EY
Sbjct:  157 PQHHLNYC-DIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSV-AFLWGPQSDIKIS--PVPKLVSPVESPLYQSVTWKEY 337          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.373e-23
Identity = 68/208 (32.69%), Postives = 109/208 (52.40%), Query Frame = -3
Query:  185 NWRDTLTISTLASTNLDPNEYPEVC---RDAAREYIKNVTKLAETLFELLSLALGLKAEHL------LEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQD-QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFRASEYFS 778
            +W  T  I  L  +NL  +E P++    R   +E+ + + KLAE + +LL   LGL+  +L         G P  +      YPPCP+P+L  G   H+D   L +L QD ++ GLQ+  D +WV V P+   +V+N+GD +++I+N K+KSV HRVVA   G R+S+  F+   +  +      + E  + E   +Y  F   +Y +
Sbjct:   84 DWESTFFIRHLPVSNL--SEIPDLTDEHRKVMKEFAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPT-FGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFPAPALVEKEAEEKKEVYPKFVFEDYMN 288          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22
Identity = 60/160 (37.50%), Postives = 83/160 (51.88%), Query Frame = -3
Query:  206 YIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDF 685
            Y   +++L+  + E+L  +LG+   H        + I+   YYPPC +P  TLG   H DP+ LTIL QD +GGLQV  + +W  ++P     VVNIGD    +SN ++KS  HR V +   PR S+  F      E+ K   P   L  A NP  Y DF
Sbjct:  167 YCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLC---PEMDKVVAPPGTLVDAANPRAYPDF 323          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.599e-22
Identity = 59/169 (34.91%), Postives = 99/169 (58.58%), Query Frame = -3
Query:  293 NWRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKE---YILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQD-QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFF 778
            +W  T  +  L  +N+  +E P++ +D   A +E+ + + KLAE L +LL   +GL+  +L +     +   +      YPPCP+P+L  G   H+D   + +L QD ++ GLQ+  D +W+ V P+   +V+NIGD L++I+N K+KSV HRV+A   G R+S+  F+
Sbjct:   85 DWESTFFLRHLPVSNI--SEIPDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLEVITNGKYKSVMHRVIAQPDGNRMSIASFY 251          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.562e-22
Identity = 65/194 (33.51%), Postives = 100/194 (51.55%), Query Frame = -3
Query:  221 WRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLFELLSLALGLKAEHL-LEIGCPKEYILLCQ--YYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKS---YGPIKELTSAENPP 775
            W D            D + +P+   D   A  EY K +  LA  +  +LS+ LGL+   L  E+G  ++ +L  +  YYP CPQP+L LG   H+D S LT +L + + GLQ+F++ QWV  + +   ++++IGD ++I+SN K+KS+ HR V +    R S   F      E PK      P+ E  +   PP
Sbjct:  143 WEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKEKVRFSWAIF-----CEPPKEKIILKPLPETVTEAEPP 331          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.562e-22
Identity = 57/152 (37.50%), Postives = 83/152 (54.61%), Query Frame = -3
Query:  236 REYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQDQIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFFMGHNAEIPKSYGPIKELTS 691
            +EY + +  L+  + ELL ++LG++  +  E     + I    YYP C QP+L LG   H DP+ LTIL QDQ+GGLQVF DN+W  + P     VVNIGD    ++N ++KS  HR V +    R +   F      ++ K   P +EL +
Sbjct:  187 QEYAEAMNTLSLKIMELLGMSLGVERRYFKEFFEDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVK---PPEELVN 335          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.652e-22
Identity = 66/204 (32.35%), Postives = 113/204 (55.39%), Query Frame = -3
Query:  191 NWRDTLTISTLASTNLDPNEYPEV---CRDAAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKE---YILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQD-QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFF-MGHNAEIPKSYGPIKELTSAENPPIYRDFRASEY 778
            +W  T  +  L  +++  +E P++    R   +E+   + +LAE L +LL   LGL+  +L +     +   +      YPPCP+P+L  G   H+D   + +L QD ++ GLQ+  D+QW+ V P+   +V+N+GD L++I+N K+KSV HRV+A   G R+S+  F+  G +A I  +   +KE  ++E   +Y  F   +Y
Sbjct:   85 DWESTFFLRHLPVSSI--SEIPDLDDDYRKVMKEFALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVMHRVIAQTDGARMSIASFYNPGDDAVISPASTLLKENETSE---VYPKFVFDDY 283          
BLAST of CX043952 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.075e-22
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = -3
Query:  191 NWRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKE-----------YILLCQYYPPCPQPDLTLGATGHSDPSFLTILLQD-QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASHVGPRVSVPCFF-MGHNAEIPKSYGPIKELTSAENPPIYRDFRASEY 778
            +W D   +        D NE+P    D     +EY + + KLAE + E++   LG       E GC K+           +     +YPPCP+ DL  G   H+D   + +L QD Q+GGLQ+  D +W+ VQP+   +V+N GD ++++SN ++KS  HRV+A+  G R S+  F+     A I  + G   E   A  P +Y  F   +Y
Sbjct:   88 DWEDVFVLQ-------DDNEWPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLGF------EKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATE--EAAPPALYPKFLFGDY 284          
The following BLAST results are available for this feature:
BLAST of CX043952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
IDS2_HORVU9.373e-2330.57Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
GAO1A_WHEAT9.373e-2337.50Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
G3OX1_ARATH9.373e-2336.76Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO_PERAE9.373e-2332.691-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
GAO1D_WHEAT1.224e-2237.50Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
ACCO_ACTDE1.599e-2234.911-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
LDOX_PETHY3.562e-2233.51Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
GAOX3_ARATH3.562e-2237.50Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
ACCO_PEA4.652e-2232.351-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO_MUSAC6.075e-2232.081-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14E03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14E03-J6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043952 ID=CX043952; Name=CX043952; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTTAGTTAAAACATATTTTTTTCGGAATTATTGGGA
AAGAGTTCACAACAGGACTCCGCAATTTGTAAATTGTTGTTACCAAATAC
GAGTAATTTATACAAATATTGCCAGCTTCATAGTTTGAGCTGATGGAGGG
GAGAATTGTCATCAAGCACCGTAGAAAATCGTTTGCTAAAATATTCACTT
GCACGAAAATCTCTGTAAATAGGAGGATTTTCTGCGGATGTCAACTCTTT
GATCGGCCCATAAGACTTTGGGATTTCTGCATTATGTCCCATGAAAAAGC
ATGGCACGGAAACCCTTGGACCGACATGACTGGCGACTACTCTGTGTTTA
ACACTCTTGAACTTGTCGTTTGATATAATCTGGAGGAAGTCCCCTATGTT
TACCACTAAGCCTCCCACAATGGGTTGAACACCAACCCATTGATTGTCAT
GAAAGACTTGAAGGCCGCCGATTTGGTCTTGCAGAAGAATGGTAAGAAAT
GAAGGGTCTGAATGCCCGGTAGCTCCCAATGTCAAATCTGGCTGAGGGCA
AGGTGGATAGTATTGGCAGAGAAGGATGTATTCTTTAGGGCATCCAATCT
CTAGTAAATGTTCAGCCTTCAGCCCAAGAGCCAGTGATAATAATTCAAAC
AGAGTTTCAGCCAATTTTGTGACATTTTTAATGTACTCTCTCGCAGCATC
TCTGCAAACTTCTGGGTATTCGTTGGGGTCTAAATTGGTGGAAGCTAAGG
TAGAAATTGTCAACGTGTCCCGCCAATTAGCTGTTCGTGAGTAATGCAGA
TCAAAGTTGC
back to top