CX043908

Overview
NameCX043908
Unique NameCX043908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.365e-14
Identity = 54/212 (25.47%), Postives = 100/212 (47.17%), Query Frame = -2
Query:  275 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.040e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = -2
Query:  275 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 5.185e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = -2
Query:  275 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 5.185e-14
Identity = 54/212 (25.47%), Postives = 99/212 (46.70%), Query Frame = -2
Query:  275 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+++   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 6.772e-14
Identity = 54/212 (25.47%), Postives = 98/212 (46.23%), Query Frame = -2
Query:  275 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT-KAEKQYVIA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T  ++K+  IA
Sbjct:   32 IGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSDKEVEIA 243          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.772e-14
Identity = 55/210 (26.19%), Postives = 99/210 (47.14%), Query Frame = -2
Query:  281 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYV 841
            +G+CPF QR  + L  K V +    ++++ KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F  T  E + +
Sbjct:   27 IGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHTCPEDKEI 235          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 56/210 (26.67%), Postives = 97/210 (46.19%), Query Frame = -2
Query:  281 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYV 841
            +G+CPF QR  + L  K V +    I+ + KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F  T  E + +
Sbjct:   27 IGNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFAHTCPEDKEI 235          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC3_HUMAN (Chloride intracellular channel protein 3 OS=Homo sapiens GN=CLIC3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.390e-13
Identity = 57/222 (25.68%), Postives = 95/222 (42.79%), Query Frame = -2
Query:  254 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKTH------GGP--------FIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 841
            +G CP  QR  + L  K VP+    ++    P    + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD +L+        G P        F+ G+++T  D SL PKL+ +     HF+Q  +P  L  V  Y       + F+ T      ++A + P V+
Sbjct:   19 VGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDFLEETL------GPPDFPSLAPRYRESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAGEPQLRESRRRFLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHSAEILAAYRPAVH 234          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.779e-13
Identity = 53/205 (25.85%), Postives = 97/205 (47.32%), Query Frame = -2
Query:  296 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:   29 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.779e-13
Identity = 53/205 (25.85%), Postives = 97/205 (47.32%), Query Frame = -2
Query:  296 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:   29 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
The following BLAST results are available for this feature:
BLAST of CX043908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC4_RAT1.365e-1425.47Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB3.040e-1425.47Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE5.185e-1425.47Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN5.185e-1425.47Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC4_HUMAN6.772e-1425.47Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_HUMAN6.772e-1426.19Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC2_RAT1.970e-1326.67Chloride intracellular channel protein 2 OS=Rattus... [more]
CLIC3_HUMAN4.390e-1325.68Chloride intracellular channel protein 3 OS=Homo s... [more]
CLIC5_RAT9.779e-1325.85Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE9.779e-1325.85Chloride intracellular channel protein 5 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B12-D24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043908 ID=CX043908; Name=CX043908; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTTTAAATCCAATGGATTTAAACCATTTAATACCCGT
AGGAGATATCCAGGAACTAAGAGTAAATACCATTCAACCAGGAGGTTTCA
TTATAACAAATAGCAAATATCATCGTAGCCACCTTTATTGGATGATACAA
ACCCCCAGTGAACATTCTAATTATGCTCCAAGTCTCACACATACATTACT
CGCATTTCATTAGCTAGATTTCAAACACCGCATAGCTTAGAACTAGTTCA
TGCATTGACCTTCGGCACCCATCCTGCAATCACGTATTGCTTTTCAGCCT
TAGTCTTCTGAAAGGATTCCAGAGCAAAAAGCTTCTTCGTGTACCCATGG
ACATGAGCCAAGCTCTCAGGGACAGTCCACTGCTTGAAATGTTCAAGAGC
TACCTGAAGGTGGTACAGCTTTGGTGCCAAGCTCAAATCTACAGCAGTGA
CCTTCTCTCCAGCAATGAATGGACCTCCATGAGTCTTAAGATGCTCATCC
AATGCTTTCAATTCCTCCAGCAAAGCTTGCTCTGTCCCATCATTTGGGTC
CTTGCTCTTCAAGAAATTGACAAAAGATGGGAATATCTTTGATCCAACAG
AGGCAAATTCAGGAGGATTAGTAAGAGAAGGCTCAGGATACTTCTCCTCA
ATAATTCTAACAATCACATCAGAGTCAGCCACCCACTTGTCATCAAACTT
TACCACAGGTACTTTCCCTTCTGGGCTTATCTCCAAAAACCATTGAGGCT
TGTCACTGATATTGATGAGGTGACGCTTGTATGGAACTTTCTTTTCCTCC
AAAGTAAGCAAAGCTCTTTGGGAAAATGGGCAGTCCCCGAGAATATCAGG
AGCGCCAACAGCGGCT
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