CX043908

Overview
NameCX043908
Unique NameCX043908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC5_HUMAN (Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.845e-12
Identity = 52/205 (25.37%), Postives = 95/205 (46.34%), Query Frame = -2
Query:  296 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                    F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:  188 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 391          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC3_MOUSE (Chloride intracellular channel protein 3 OS=Mus musculus GN=Clic3 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 56/222 (25.23%), Postives = 92/222 (41.44%), Query Frame = -2
Query:  254 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASV----------GSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDE--------------HLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 841
            +G CP  QR  + L  K VP+    ++         + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ IF  F  F+K+  P  ++   Q LL  L  LD               HL+     F+ G++ T  D SL PKL+ +     HF+Q  +P  L+ V  Y       + F+ T      ++A + P V+
Sbjct:   20 VGHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETL------GPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVPTQDNALYQQLLRALTRLDSYLRAPLDHELAQEPHLRESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYTCPHSAEILAAYQPAVH 235          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = -2
Query:  353 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVG--------SKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 832
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      V +S +    ++E YPE  L     +            SK+ P   +F++SK   D     +AL  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: CLIC5_BOVIN (Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.412e-11
Identity = 52/206 (25.24%), Postives = 93/206 (45.15%), Query Frame = -2
Query:  296 LGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT-----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 841
            +G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP  +  +  E  + G  IF  F  ++K+  +  N   E+ L + LK LD++L T                     F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y K  +A + F  T A
Sbjct:  214 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKH-RESNTAGIDIFVKFSAYIKNTKQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCA 418          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = -2
Query:  392 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 832
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      + +S +    ++E YPE  L   +P E A       + SK+     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
BLAST of CX043908 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 46/158 (29.11%), Postives = 81/158 (51.27%), Query Frame = -2
Query:  392 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSL--TNPPEFA------SVGSKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 832
            CPF+QR LL L  K + ++   IN+ +KP+WF + +P G VPV++    + + +S +    ++E YP   L   +P E A       + SK+ P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
The following BLAST results are available for this feature:
BLAST of CX043908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC5_HUMAN2.845e-1225.37Chloride intracellular channel protein 5 OS=Homo s... [more]
CLIC3_MOUSE4.853e-1225.23Chloride intracellular channel protein 3 OS=Mus mu... [more]
GSTO1_MOUSE1.412e-1130.99Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
CLIC5_BOVIN1.412e-1125.24Chloride intracellular channel protein 5 OS=Bos ta... [more]
GSTO1_RAT5.366e-1129.75Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTO1_PIG5.366e-1129.11Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B12-D24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043908 ID=CX043908; Name=CX043908; organism=Citrus sinensis; type=EST; length=866bp
TTTTTTTTTTTTTTTTTAAATCCAATGGATTTAAACCATTTAATACCCGT
AGGAGATATCCAGGAACTAAGAGTAAATACCATTCAACCAGGAGGTTTCA
TTATAACAAATAGCAAATATCATCGTAGCCACCTTTATTGGATGATACAA
ACCCCCAGTGAACATTCTAATTATGCTCCAAGTCTCACACATACATTACT
CGCATTTCATTAGCTAGATTTCAAACACCGCATAGCTTAGAACTAGTTCA
TGCATTGACCTTCGGCACCCATCCTGCAATCACGTATTGCTTTTCAGCCT
TAGTCTTCTGAAAGGATTCCAGAGCAAAAAGCTTCTTCGTGTACCCATGG
ACATGAGCCAAGCTCTCAGGGACAGTCCACTGCTTGAAATGTTCAAGAGC
TACCTGAAGGTGGTACAGCTTTGGTGCCAAGCTCAAATCTACAGCAGTGA
CCTTCTCTCCAGCAATGAATGGACCTCCATGAGTCTTAAGATGCTCATCC
AATGCTTTCAATTCCTCCAGCAAAGCTTGCTCTGTCCCATCATTTGGGTC
CTTGCTCTTCAAGAAATTGACAAAAGATGGGAATATCTTTGATCCAACAG
AGGCAAATTCAGGAGGATTAGTAAGAGAAGGCTCAGGATACTTCTCCTCA
ATAATTCTAACAATCACATCAGAGTCAGCCACCCACTTGTCATCAAACTT
TACCACAGGTACTTTCCCTTCTGGGCTTATCTCCAAAAACCATTGAGGCT
TGTCACTGATATTGATGAGGTGACGCTTGTATGGAACTTTCTTTTCCTCC
AAAGTAAGCAAAGCTCTTTGGGAAAATGGGCAGTCCCCGAGAATATCAGG
AGCGCCAACAGCGGCT
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