CX043898

Overview
NameCX043898
Unique NameCX043898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.087e-32
Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ VS KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F E+L K+D R+G+ +E+ P+FLK GDA  VK+ PTKPMV+E   E P LGRFA+RDM  T+A G+   V  K+
Sbjct:  292 GFNVRGVSKKDIKRGDVCGHP-DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.644e-32
Identity = 69/136 (50.74%), Postives = 94/136 (69.12%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A +  E+ +KID ++GKE+EK P+FLK+GD+  VKM P K +VVE F E+P LGRFA+RDM +TV VGV+  V  K
Sbjct:  296 GFNVRGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_THEON (Elongation factor 1-alpha OS=Thermococcus onnurineus (strain NA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.133e-31
Identity = 64/139 (46.04%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V   D+KRG VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT  +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  290 GFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITIGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNVVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.480e-31
Identity = 64/139 (46.04%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V   D+KRG VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT  +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTKPMV+E   E P +GRFA+RDM QTVA G++ S+ K +
Sbjct:  290 GFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.480e-31
Identity = 67/137 (48.91%), Postives = 93/137 (67.88%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  + +GY PV   HT+ IA  FAEI  K++  +G+ LE+ P FLK GDA  VK+IPTKPMV+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  292 GFNVRGVGKKDIKRGDVLGHTTNPPTV-ATDFTAQIVVLQHPSVLTDGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = -2
Query:  422 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 820
            GFNV+ V  KD+KRG VA + ++ P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + +EI ++ID ++GKE EK P+F+K GD+  VK  P K +V E F E+P LGRFA+RDM +TV VGVI  V
Sbjct:  296 GFNVRGVEKKDVKRGDVAGSVQNPPTV-ADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDV 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 64/139 (46.04%), Postives = 93/139 (66.91%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPA--KGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V   D+KRG VA ++ + P   +    F +Q+I++NHP  I  GY PVL  HT+ +AV+F ++L K+D R+G  +E+ P+F+K GD+  V + PTK MV+E   E P +GRFA+RDM QTVA G++ S+ K D
Sbjct:  290 GFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.297e-31
Identity = 64/133 (48.12%), Postives = 91/133 (68.42%), Query Frame = -2
Query:  422 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 820
            GFNV+ +S KD++RG VA +  D P   A  FT+++ ++ HP  I  GY PV+  HT+ IA +  EI  K+D R+G+ +EK P+FLK GDA  VK  P KPMV+E +SE+P LGRFA+RDM +T+ +G++  V
Sbjct:  298 GFNVRGISKKDIRRGDVAGHV-DKPPTVAEEFTARIFVIWHPSAITVGYTPVIHAHTASIAARITEIQAKLDPRTGQVIEKNPQFLKAGDAAIVKFKPIKPMVIEKYSEFPQLGRFAMRDMGKTIGIGIVVDV 429          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.307e-31
Identity = 67/137 (48.91%), Postives = 92/137 (67.15%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  +  GY PV   HT+ IA  FAEI  K++  +G+ LE+ P FLK GDA  VK+IPTKPMV+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  292 GFNVRGVGKKDIKRGDVLGHTTNPPTV-ATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METS5 (Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.307e-31
Identity = 64/133 (48.12%), Postives = 93/133 (69.92%), Query Frame = -2
Query:  422 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 820
            GFNV+ +  KD+KRG V  ++ + P   A  FT++VI++ HP  +  GY PV+  HT+ IA + +EI+ ++D ++GKE EK P+F+K G++  VK  P KP+ VE FS++PPLGRFA+RDM +TV VGVI  V
Sbjct:  296 GFNVRGIDKKDVKRGDVVGHTTNPPTV-AEEFTARVIVVWHPTALAVGYTPVVHVHTASIACRVSEIVARLDPKTGKEAEKNPQFIKQGESAIVKFKPIKPLCVEKFSDFPPLGRFAMRDMGKTVGVGVINDV 427          
The following BLAST results are available for this feature:
BLAST of CX043898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METJA5.087e-3248.91Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_SULTO6.644e-3250.74Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_THEON1.133e-3146.04Elongation factor 1-alpha OS=Thermococcus onnurine... [more]
EF1A_THECE1.480e-3146.04Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_METVA1.480e-3148.91Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_SULAC3.297e-3151.88Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_PYRKO3.297e-3146.04Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_HYPBU3.297e-3148.12Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_METVS4.307e-3148.91Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS54.307e-3148.12Elongation factor 1-alpha OS=Metallosphaera sedula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_14B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B06-D12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043898 ID=CX043898; Name=CX043898; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTGAAAATGGCAAACT
AGATAGAACATAAAACATCAACAAACAACATCTTAAGGAGCTCAGCAAAG
ACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGTTTGAACATGACAT
GGACAACAAAAATAGACTCAATACAGTAATCTCGCCACCGCCGATCAAGA
ACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTGACGAATTGTAATT
ATAACCAGCAAATTGACGACCCAAACATCCAACACATTTATGCCTAAAAA
GAACACAATCTTTATTGTGATGACGCCTATAGACATTACTTGCAAACAAA
GATACCAGCACAGTTCACTTCTTCTTCACAGCAAACTTGGTTACCTTGGC
TCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACTCCAACAGCGACGG
TCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGGGGGATATTCGGAG
AAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCTTAACAAACCCAGC
ATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGCTCCTTACCAGATC
GCCTGTCAATCTTGGTCAAGATTTCAGCAAACTTGACAGCTATGTGGGAA
GTGTGGCAATCAAGAACAGGTGCATAACCGTTTCCAATCTGGCCAGGGTG
GTTCATGATGATAACTTGGGAGGTGAAGTTGGATGCCCCCTTGGCGGGAT
CGTCCTTGGAGTTAGATGCAACGTAACCACGCTTAAGATCCTTCACTGAA
ACATTCTTAACGTTGAACCCC
back to top