CX043898

Overview
NameCX043898
Unique NameCX043898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  +  GY PV   HT+ IA  F E+  K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  292 GFNVRGVGKKDIKRGDVLGHTTNPPTV-AADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  +  GY PV   HT+ IA  F E+  K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  292 GFNVRGVGKKDIKRGDVLGHTTNPPTV-AADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.363e-29
Identity = 63/137 (45.99%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNV+ V  KD+KRG V  ++ + P   A++FT+Q++++ HP  +  GY PV   HT+ IA  F E+  K++  +G+ LE+ P FLK GDA  VK++PTKP+V+E+  E P LGRFA+RDM  TVA G+   V  K+
Sbjct:  292 GFNVRGVGKKDIKRGDVLGHTTNPPTV-AADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ ++  D+KRG V  +  D P      FT+Q+I++NHP  I  GY PV   HT+ +A +  EI+  ++ + G  L+++P F+KNGD   VK+IP KP+V+E  SE P LGRFAVRDM QTVA G    ++K+
Sbjct:  290 GFNVRGIAKNDIKRGDVCGHL-DTPPTVVKAFTAQIIVLNHPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTTLKEKPDFIKNGDVAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.876e-29
Identity = 58/133 (43.61%), Postives = 84/133 (63.16%), Query Frame = -2
Query:  422 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 820
            G+NV+ +   D++RG V  +  D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A    EI  K+D R+G   E+ P F+K GDA  + + PTKPMV+E   E P LGRFA+RDM  T+A G+ ++V
Sbjct:  290 GWNVRGIGKNDIRRGDVCGHV-DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.980e-29
Identity = 56/136 (41.18%), Postives = 91/136 (66.91%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFN++ +  KD+KRG V  +  + P K A  F +Q+I+++HP  +  GY PV+ CHT+ +A   +E ++KI+  +G   E+ PKFLK GD+  +K+ P +P  +ETF E+P +GRFA+RDM  T+A G++K + ++
Sbjct:  299 GFNLRGIEKKDIKRGDVLGDPANPP-KVAKEFLAQIIVIHHPTALAPGYTPVMHCHTAQVAAIMSEFVSKINPATGAVEEENPKFLKVGDSAIIKIRPVRPTPIETFKEFPEMGRFALRDMGATIAAGIVKEITEE 433          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.173e-28
Identity = 62/136 (45.59%), Postives = 86/136 (63.24%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            G+NV+ +   D++RG V  ++ D+P K A  F  Q++++ HP  I  GY PV   HTS IA +  E+  K+D +SG+  E+ P FLK GDA  V + PTKPMV+E   E P LGRFA+RDM  T+A G+  SV +K
Sbjct:  288 GWNVRGIGKADVRRGDVCGHT-DNPPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ ++  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  EI+  ++ + G  L+ +P F+K GD   VK+IP KP+V+E  SE P LGRFAVRDM QTVA G    ++K+
Sbjct:  290 GFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.820e-28
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEL-------------EKEPK------FLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNVK ++VKD+KRG V  ++K+DP      F + VII +H   I NGY PVLDCHT+HIA KFA IL+K D+R GK+              + EP+        K G++  V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+ V  ++
Sbjct:  326 GFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHKN-IRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCVQPRN 478          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.602e-28
Identity = 57/133 (42.86%), Postives = 91/133 (68.42%), Query Frame = -2
Query:  422 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 820
            G NV+ ++ +D+KRG V     + P   A    ++++++ HP  IG GYAPV+  HT+ + V+  E+++K+D R+G+ +E++P+F+K GD   VK+ P KP+V E FS++PPLGRFA+RDM +T+A G I  V
Sbjct:  305 GVNVRGIAKEDVKRGDVLGKPDNVPTV-AEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEV 436          
The following BLAST results are available for this feature:
BLAST of CX043898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METMP2.363e-2945.99Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM62.363e-2945.99Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM52.363e-2945.99Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_THEAC4.031e-2945.59Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_METTP6.876e-2943.61Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_CENSY8.980e-2941.18Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METBF1.173e-2845.59Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_THEVO2.613e-2844.85Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1AS_PORPU5.820e-2848.72Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_PYRAE7.602e-2842.86Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B06-D12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043898 ID=CX043898; Name=CX043898; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTGAAAATGGCAAACT
AGATAGAACATAAAACATCAACAAACAACATCTTAAGGAGCTCAGCAAAG
ACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGTTTGAACATGACAT
GGACAACAAAAATAGACTCAATACAGTAATCTCGCCACCGCCGATCAAGA
ACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTGACGAATTGTAATT
ATAACCAGCAAATTGACGACCCAAACATCCAACACATTTATGCCTAAAAA
GAACACAATCTTTATTGTGATGACGCCTATAGACATTACTTGCAAACAAA
GATACCAGCACAGTTCACTTCTTCTTCACAGCAAACTTGGTTACCTTGGC
TCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACTCCAACAGCGACGG
TCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGGGGGATATTCGGAG
AAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCTTAACAAACCCAGC
ATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGCTCCTTACCAGATC
GCCTGTCAATCTTGGTCAAGATTTCAGCAAACTTGACAGCTATGTGGGAA
GTGTGGCAATCAAGAACAGGTGCATAACCGTTTCCAATCTGGCCAGGGTG
GTTCATGATGATAACTTGGGAGGTGAAGTTGGATGCCCCCTTGGCGGGAT
CGTCCTTGGAGTTAGATGCAACGTAACCACGCTTAAGATCCTTCACTGAA
ACATTCTTAACGTTGAACCCC
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