CX043898

Overview
NameCX043898
Unique NameCX043898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ V   D++RG V   + DDP   A  F +Q+++M HP  I  GY PV   HT+ +A     I  KID  SG+  E+ P F++NGDA  V + P KP+ +E  SE P LG FA+RDM QT+A G +  V+++
Sbjct:  287 GFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQIVVMQHPSVITEGYTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26
Identity = 57/136 (41.91%), Postives = 81/136 (59.56%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ +    ++RG V  +    P   A  F +QV+++ HP  I  GY PV  CHT+ +A    +IL  +D ++G   E+ P F+K GDA  V + PT+P+V+E   E P LGRFA+RDM QTVA GV+  +  K
Sbjct:  292 GFNVRGIEKNLIRRGDVCGHVDKQPTV-AVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ V   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     I  KID  SG+  E+ P F+++GDA  V + P KP+ +E+ +E P LG FA+RDM QTVA G + SV+++
Sbjct:  288 GFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNV+ +   D++RG V   S + P   A  F +QV++M HP  I  GY PV   HT+ +A     I  K+D  SG+  E++P F+K+GDA  V + P KP+ +E  +E P LG FAVRDM QT+A G +  VD++
Sbjct:  287 GFNVRGIGKDDIRRGDVCGPSSNAPTV-AETFKAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDQKLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKVLEVDER 421          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  416 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 820
            GFNV+ +   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     I  K+D  SG+  E+ P F+++GDA  V + P KP+ +E  SE P LG FAVRDM QT+A G +  VD+
Sbjct:  287 GFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25
Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  416 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 820
            GFNV+ +   D++RG V   + DDP   A  F +QV++M HP  I  GY PV   HT+ +A     I  K+D  SG+  E+ P F+++GDA  V + P KP+ +E  SE P LG FAVRDM QT+A G +  VD+
Sbjct:  287 GFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.704e-25
Identity = 56/136 (41.18%), Postives = 88/136 (64.71%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GF+V+ +   D+ RG VA +  D+P   A    + + ++ HP  I  GYAPVL  HT+H+ V+F E+  K++  +G+ +E+ P+ L+ G+A  VK+ P KP+V+E F + P LGRFA+RDM +TVA+G+ + V  K
Sbjct:  293 GFSVRGIEKGDVMRGDVAGHL-DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24
Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = -2
Query:  431 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 820
            G NV+    +DLKRG V  +  + P   A    +++ ++ HP  IG GY PV+  HT+ +  +  E+++++D  +G+ +E++P+F+K GD   V++ P KP+VVE FS+ P LGRF++RDM +TVA G I
Sbjct:  304 GINVRGFERQDLKRGDVVGHLNNPPTV-AEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQI 432          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = -2
Query:  431 VKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 811
            +K V  +DL+ GYV ++ K+ P K  + F +Q+ I+     + NG++ V+  HT+   VKF E+  K+++ + ++ +K P F K G      +  ++P+  ET+ +YP LGRF +RD   T+A+G I
Sbjct:  583 IKGVEEEDLQPGYVLTSPKN-PVKTVTKFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKI 708          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 41/130 (31.54%), Postives = 75/130 (57.69%), Query Frame = -2
Query:  422 VKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 811
            +K V  +D+  G+V ++ K+ P K  + F +QV I+     + +G++ V+  HT+   V+  ++L K++R + ++ +K P F K G      +   +P+ VET+ +YP LGRF +RD   T+A+G I  +
Sbjct:  532 IKGVEEEDIAPGFVLTSPKN-PVKNVTRFVAQVAIVELKSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 660          
The following BLAST results are available for this feature:
BLAST of CX043898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_HALMA2.445e-2643.38Elongation factor 1-alpha OS=Haloarcula marismortu... [more]
EF1A_UNCMA3.194e-2641.91Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_NATPD3.194e-2644.12Elongation factor 1-alpha OS=Natronomonas pharaoni... [more]
EF1A_HALWD1.585e-2542.65Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_HALSA1.585e-2543.70Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS31.585e-2543.70Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_NANEQ2.704e-2541.18Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_CALMQ2.289e-2440.00Elongation factor 1-alpha OS=Caldivirga maquilinge... [more]
ERF3_CANMA2.996e-1633.86Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO1.942e-1531.54Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B06-D12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043898 ID=CX043898; Name=CX043898; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTGAAAATGGCAAACT
AGATAGAACATAAAACATCAACAAACAACATCTTAAGGAGCTCAGCAAAG
ACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGTTTGAACATGACAT
GGACAACAAAAATAGACTCAATACAGTAATCTCGCCACCGCCGATCAAGA
ACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTGACGAATTGTAATT
ATAACCAGCAAATTGACGACCCAAACATCCAACACATTTATGCCTAAAAA
GAACACAATCTTTATTGTGATGACGCCTATAGACATTACTTGCAAACAAA
GATACCAGCACAGTTCACTTCTTCTTCACAGCAAACTTGGTTACCTTGGC
TCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACTCCAACAGCGACGG
TCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGGGGGATATTCGGAG
AAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCTTAACAAACCCAGC
ATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGCTCCTTACCAGATC
GCCTGTCAATCTTGGTCAAGATTTCAGCAAACTTGACAGCTATGTGGGAA
GTGTGGCAATCAAGAACAGGTGCATAACCGTTTCCAATCTGGCCAGGGTG
GTTCATGATGATAACTTGGGAGGTGAAGTTGGATGCCCCCTTGGCGGGAT
CGTCCTTGGAGTTAGATGCAACGTAACCACGCTTAAGATCCTTCACTGAA
ACATTCTTAACGTTGAACCCC
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