CX043898
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALMA (Elongation factor 1-alpha OS=Haloarcula marismortui GN=tuf PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26 Identity = 59/136 (43.38%), Postives = 82/136 (60.29%), Query Frame = -2 Query: 413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820 GFNV+ V D++RG V + DDP A F +Q+++M HP I GY PV HT+ +A I KID SG+ E+ P F++NGDA V + P KP+ +E SE P LG FA+RDM QT+A G + V+++ Sbjct: 287 GFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQIVVMQHPSVITEGYTPVFHAHTAQVACTVESIDKKIDPSSGEVAEENPDFIQNGDAAVVTVRPQKPLSIEPSSEIPELGSFAIRDMGQTIAAGKVLGVNER 421
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26 Identity = 57/136 (41.91%), Postives = 81/136 (59.56%), Query Frame = -2 Query: 413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820 GFNV+ + ++RG V + P A F +QV+++ HP I GY PV CHT+ +A +IL +D ++G E+ P F+K GDA V + PT+P+V+E E P LGRFA+RDM QTVA GV+ + K Sbjct: 292 GFNVRGIEKNLIRRGDVCGHVDKQPTV-AVEFKAQVVVLQHPSAITAGYTPVFHCHTAQVACTLTQILATLDPKTGGVKEQNPPFIKTGDAAIVLIRPTRPLVIEKVKEIPQLGRFAIRDMGQTVAAGVVMDITPK 426
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_NATPD (Elongation factor 1-alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tuf PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26 Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -2 Query: 413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820 GFNV+ V D++RG V + DDP A F +QV++M HP I GY PV HT+ +A I KID SG+ E+ P F+++GDA V + P KP+ +E+ +E P LG FA+RDM QTVA G + SV+++ Sbjct: 288 GFNVRGVGKDDIRRGDVCGPA-DDPPSVAETFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKIDPSSGEVAEENPDFIQSGDAAVVTVRPQKPLSIESSNEIPELGSFAIRDMGQTVAAGKVLSVNER 422
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25 Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = -2 Query: 413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820 GFNV+ + D++RG V S + P A F +QV++M HP I GY PV HT+ +A I K+D SG+ E++P F+K+GDA V + P KP+ +E +E P LG FAVRDM QT+A G + VD++ Sbjct: 287 GFNVRGIGKDDIRRGDVCGPSSNAPTV-AETFKAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDQKLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKVLEVDER 421
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25 Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = -2 Query: 416 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 820 GFNV+ + D++RG V + DDP A F +QV++M HP I GY PV HT+ +A I K+D SG+ E+ P F+++GDA V + P KP+ +E SE P LG FAVRDM QT+A G + VD+ Sbjct: 287 GFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.585e-25 Identity = 59/135 (43.70%), Postives = 81/135 (60.00%), Query Frame = -2 Query: 416 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 820 GFNV+ + D++RG V + DDP A F +QV++M HP I GY PV HT+ +A I K+D SG+ E+ P F+++GDA V + P KP+ +E SE P LG FAVRDM QT+A G + VD+ Sbjct: 287 GFNVRGIGKDDIRRGDVCGPA-DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTIESIDKKMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.704e-25 Identity = 56/136 (41.18%), Postives = 88/136 (64.71%), Query Frame = -2 Query: 413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820 GF+V+ + D+ RG VA + D+P A + + ++ HP I GYAPVL HT+H+ V+F E+ K++ +G+ +E+ P+ L+ G+A VK+ P KP+V+E F + P LGRFA+RDM +TVA+G+ + V K Sbjct: 293 GFSVRGIEKGDVMRGDVAGHL-DNPPTVAEEIVALIHVIYHPSAITVGYAPVLHVHTAHVPVRFEELRGKVNPATGQVIEENPQALRPGEAAVVKLKPLKPVVIEPFDKIPQLGRFAIRDMGRTVAIGIARQVTPK 427
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_CALMQ (Elongation factor 1-alpha OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=tuf PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.289e-24 Identity = 52/130 (40.00%), Postives = 84/130 (64.62%), Query Frame = -2 Query: 431 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 820 G NV+ +DLKRG V + + P A +++ ++ HP IG GY PV+ HT+ + + E+++++D +G+ +E++P+F+K GD V++ P KP+VVE FS+ P LGRF++RDM +TVA G I Sbjct: 304 GINVRGFERQDLKRGDVVGHLNNPPTV-AEEIVARIAVLEHPTTIGVGYTPVMHVHTATVPTQIIELISRLDPATGQTVEQKPQFIKRGDVAMVRLKPLKPVVVERFSDLPALGRFSLRDMGRTVAAGQI 432
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.996e-16 Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = -2 Query: 431 VKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVI 811 +K V +DL+ GYV ++ K+ P K + F +Q+ I+ + NG++ V+ HT+ VKF E+ K+++ + ++ +K P F K G + ++P+ ET+ +YP LGRF +RD T+A+G I Sbjct: 583 IKGVEEEDLQPGYVLTSPKN-PVKTVTKFEAQIAIVELKSILSNGFSCVMHLHTAIEEVKFVELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVSEPVCAETYKDYPQLGRFTLRDQGTTIAIGKI 708
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15 Identity = 41/130 (31.54%), Postives = 75/130 (57.69%), Query Frame = -2 Query: 422 VKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 811 +K V +D+ G+V ++ K+ P K + F +QV I+ + +G++ V+ HT+ V+ ++L K++R + ++ +K P F K G + +P+ VET+ +YP LGRF +RD T+A+G I + Sbjct: 532 IKGVEEEDIAPGFVLTSPKN-PVKNVTRFVAQVAIVELKSILSSGFSCVMHVHTAIEEVRITKLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTIAIGKIVKI 660 The following BLAST results are available for this feature:
BLAST of CX043898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 171
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043898 ID=CX043898; Name=CX043898; organism=Citrus sinensis; type=EST; length=821bpback to top |