CX043898

Overview
NameCX043898
Unique NameCX043898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = -2
Query:  407 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 820
            GFNVKNVSVKD++RG V  +SK+DP  G ++FT+QVII+NHPGQI  GY+PVLDCHT+HIA KFAE++ KIDRRSGK++E+ PKF+K+GDA   KM+P+KPM VE F++Y PLGRFAVRDMRQTVAVGVIK+V+K  P
Sbjct:  307 GFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52
Identity = 99/136 (72.79%), Postives = 117/136 (86.03%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  309 GFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52
Identity = 99/136 (72.79%), Postives = 117/136 (86.03%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNVKNVSVKD++RG V  +SK DP + A+ FTSQVII+NHPGQI  GY+PV+DCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS+YPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  309 GFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKK 444          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.165e-52
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = -2
Query:  407 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 820
            GFNVKNVSVKD++RG V  +SK+DP  G ++FT+QVII+NHPGQI  GY+PVLDCHT+HIA KFAE++ KIDRRSGK++E+ PKF+K+GDA   KM+P+KPM VE F++Y PLGRFAVRDMRQTVAVGVIK+V+K  P
Sbjct:  307 GFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAP 444          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.595e-52
Identity = 96/137 (70.07%), Postives = 116/137 (84.67%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNVKNVSVK+++RG V  ++K+DP KG ++F + VI++NHPGQI  GY+PVLDCHT+HIA +F E+L K DRRSGK+LE  PKFLK+GDA  VK +P+KPM VE FSEYPPLGRFAVRDMRQTVAVGVIKSVDK +
Sbjct:  307 GFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.389e-52
Identity = 94/140 (67.14%), Postives = 118/140 (84.29%), Query Frame = -2
Query:  401 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 820
            GFNVKNVS+KD++RG V  +SK+DP   A++F +QVI++NHPGQIG GY PVLDCHT+HIA KFAE++ KIDRR+GK +E  PKF+K+GDA  VK++  KP+ VET+++YPPLGRFAVRDMRQTVAVGVIKSVDK +  G
Sbjct:  307 GFNVKNVSIKDIRRGNVCGDSKNDPPMEAASFNAQVIVLNHPGQIGAGYTPVLDCHTAHIACKFAELIEKIDRRTGKVMEAAPKFVKSGDAAIVKLVAQKPLCVETYADYPPLGRFAVRDMRQTVAVGVIKSVDKTEKGG 446          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 4.426e-52
Identity = 94/137 (68.61%), Postives = 119/137 (86.86%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNVKNVSVK+L+RGYVA +SK++P +GA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+EI  K DRR+GK  E EPK +K+GDA  + ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIKSV+ K+
Sbjct:  309 GFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.549e-52
Identity = 93/137 (67.88%), Postives = 118/137 (86.13%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNVKNVS+KD+KRG+VAS++K+DPAKG  +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  I  K+D+RSGK LE+ PK +K+GDA  V M P KP+ VE F++YPPLGRFAVRDM+QTVAVGVIKSV KK+
Sbjct:  293 GFNVKNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.859e-52
Identity = 97/135 (71.85%), Postives = 117/135 (86.67%), Query Frame = -2
Query:  416 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDK 820
            GFNVKNVS+KD++RG VAS+SK+DPA  A++F +QVII+NHPG+I  GY PVLDCHT+HIA KFAE+L KIDRRSGK +E EPK +K+GDA  + +IP+K M VE+FS+YPPLGRFAVRDMRQTVAVGVIK VDK
Sbjct:  311 GFNVKNVSIKDIRRGMVASDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACKFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.682e-51
Identity = 96/137 (70.07%), Postives = 116/137 (84.67%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNVKNVSVKD++RG V  ++K DP K A++F +QVI++NHPGQIGNGY PVLDCHT+HIA KF  +  KIDRR+GK LE+ PKF+K+GDA  VKM+P+K M VE F++YPPLGRFAVRDMRQTVAVGVIKSV+K D
Sbjct:  306 GFNVKNVSVKDIRRGNVCGDTKCDPPKEAASFVAQVIVLNHPGQIGNGYCPVLDCHTAHIACKFDTLQQKIDRRTGKALEEAPKFVKSGDACLVKMVPSKAMCVEPFADYPPLGRFAVRDMRQTVAVGVIKSVEKTD 442          
The following BLAST results are available for this feature:
BLAST of CX043898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A2_SCHPO1.165e-5269.57Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A2_RAT1.165e-5272.79Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_MOUSE1.165e-5272.79Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]
EF1A1_SCHPO1.165e-5269.57Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_YEAST2.595e-5270.07Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_CRYNE3.389e-5267.14Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A2_DROME4.426e-5268.61Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_CRYPV7.549e-5267.88Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_HYDAT9.859e-5271.85Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_PUCGR1.682e-5170.07Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B06-D12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043898 ID=CX043898; Name=CX043898; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTGAAAATGGCAAACT
AGATAGAACATAAAACATCAACAAACAACATCTTAAGGAGCTCAGCAAAG
ACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGTTTGAACATGACAT
GGACAACAAAAATAGACTCAATACAGTAATCTCGCCACCGCCGATCAAGA
ACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTGACGAATTGTAATT
ATAACCAGCAAATTGACGACCCAAACATCCAACACATTTATGCCTAAAAA
GAACACAATCTTTATTGTGATGACGCCTATAGACATTACTTGCAAACAAA
GATACCAGCACAGTTCACTTCTTCTTCACAGCAAACTTGGTTACCTTGGC
TCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACTCCAACAGCGACGG
TCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGGGGGATATTCGGAG
AAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCTTAACAAACCCAGC
ATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGCTCCTTACCAGATC
GCCTGTCAATCTTGGTCAAGATTTCAGCAAACTTGACAGCTATGTGGGAA
GTGTGGCAATCAAGAACAGGTGCATAACCGTTTCCAATCTGGCCAGGGTG
GTTCATGATGATAACTTGGGAGGTGAAGTTGGATGCCCCCTTGGCGGGAT
CGTCCTTGGAGTTAGATGCAACGTAACCACGCTTAAGATCCTTCACTGAA
ACATTCTTAACGTTGAACCCC
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