CX043898

Overview
NameCX043898
Unique NameCX043898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.682e-51
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = -2
Query:  401 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPSG 820
            GFNVKNVSVK+++RG V  +SK+DP K A +F + VI++NHPGQI  GY+PVLDCHT+HIA KF E+L K DRR+GK+LE  PKFLK GDA  VK +P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIKSV K D +G
Sbjct:  307 GFNVKNVSVKEIRRGNVCGDSKNDPPKAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSDKAG 446          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.196e-51
Identity = 92/137 (67.15%), Postives = 118/137 (86.13%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFNVKNVSVK++KRGYVAS++K++PAKG S FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  I +KID+RSGK +E+ PK +K+GD+  V + P KPMVVETF+EYPPLGRFA+RDMRQT+AVG+I  + +K+
Sbjct:  295 GFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.747e-51
Identity = 97/137 (70.80%), Postives = 113/137 (82.48%), Query Frame = -2
Query:  410 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKD 820
            GFN+K VSVKD++RG VAS++K+DPAK A+ F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  I  KIDRR+GK  E+ PKF+KNGDA  V +IPTK + VE F EYPPLGR+AVRDM+QTVAVGVIK V+KKD
Sbjct:  298 GFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.574e-49
Identity = 90/134 (67.16%), Postives = 117/134 (87.31%), Query Frame = -2
Query:  422 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELE-KEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 820
            GFNV+N++VKD+KRG VAS++K+ PA G  +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF E+L+KIDRR+GK +E  EP+++KNGD+  VK++PTKP+ VE F+++PPLGRFAVRDM+QTVAVGV+K+V
Sbjct:  295 GFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.580e-49
Identity = 90/136 (66.18%), Postives = 111/136 (81.62%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNVK +SVKD+KRG+VAS+SK+DPA    +F S  I+MNHPG+I  GY PV+DCHT+HIA KF E+LTK D+RSGK  E+ PKFLK GDAG +++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ + KK
Sbjct:  297 GFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 4.287e-47
Identity = 92/141 (65.25%), Postives = 112/141 (79.43%), Query Frame = -2
Query:  407 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKE---PKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDP 820
            GFNVKNVSVK++KRG VA +SK+DP +    F +QVI++NHPGQI  GY+PVLDCHT+HIA KF EI+ K+DRR+G  + KE      LKNGDA  V++ P++PM VE+F+EYPPLGRFAVRDMRQTVAVGVIKS  KK P
Sbjct:  297 GFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 8.084e-46
Identity = 87/136 (63.97%), Postives = 107/136 (78.68%), Query Frame = -2
Query:  413 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKK 820
            GFNVKN++VK LKRG VA NSK DP   AS+FT+QVII+NHPG I  GY+PV+DCHT+HI  +FAE+  KIDRR+GK+LE  P  LK+GDA  + + P KP  VE F +YPPLGRFA RD++QTVAVGV+KSV+ K
Sbjct:  312 GFNVKNIAVKSLKRGNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 81/119 (68.07%), Postives = 102/119 (85.71%), Query Frame = -2
Query:  464 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 820
            GFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  295 GFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 81/119 (68.07%), Postives = 102/119 (85.71%), Query Frame = -2
Query:  464 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 820
            GFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  295 GFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX043898 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.240e-45
Identity = 81/119 (68.07%), Postives = 102/119 (85.71%), Query Frame = -2
Query:  464 GFNVKNVSVKDLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVR 820
            GFNVKNVSVK+L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVR
Sbjct:  295 GFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CX043898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_ASHGO1.682e-5168.57Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_PLAFK2.196e-5167.15Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_TETPY3.747e-5170.80Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_ENTHI1.574e-4967.16Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_EUPCR4.580e-4966.18Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DICDI4.287e-4765.25Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_XENLA8.084e-4663.97Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_SPOFR5.240e-4568.07Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE5.240e-4568.07Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI5.240e-4568.07Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B06-D12-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043898 ID=CX043898; Name=CX043898; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTCCAGAAGCCAAAAATATTTGAAAATGGCAAACT
AGATAGAACATAAAACATCAACAAACAACATCTTAAGGAGCTCAGCAAAG
ACCTAAAACTCCTGAGCTGCTTACAAAATATCCAAGTTTGAACATGACAT
GGACAACAAAAATAGACTCAATACAGTAATCTCGCCACCGCCGATCAAGA
ACCCAGTTCTGTGAACAAAAGTCTCTTGTCGATGGTGACGAATTGTAATT
ATAACCAGCAAATTGACGACCCAAACATCCAACACATTTATGCCTAAAAA
GAACACAATCTTTATTGTGATGACGCCTATAGACATTACTTGCAAACAAA
GATACCAGCACAGTTCACTTCTTCTTCACAGCAAACTTGGTTACCTTGGC
TCCAGATGGATCCTTCTTGTCCACGCTCTTGATGACTCCAACAGCGACGG
TCTGGCGCATGTCTCTCACAGCAAAACGACCAAGTGGGGGATATTCGGAG
AAAGTTTCCACAACCATAGGCTTGGTGGGAATCATCTTAACAAACCCAGC
ATCACCATTCTTTAAGAATTTGGGCTCCTTCTCCAGCTCCTTACCAGATC
GCCTGTCAATCTTGGTCAAGATTTCAGCAAACTTGACAGCTATGTGGGAA
GTGTGGCAATCAAGAACAGGTGCATAACCGTTTCCAATCTGGCCAGGGTG
GTTCATGATGATAACTTGGGAGGTGAAGTTGGATGCCCCCTTGGCGGGAT
CGTCCTTGGAGTTAGATGCAACGTAACCACGCTTAAGATCCTTCACTGAA
ACATTCTTAACGTTGAACCCC
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