CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043893_ssr199 microsatellite CX043893_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3609 contig Csv1_Contig3609:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRPD (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rsmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:   13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVS 234          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRPC (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rsmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:   13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVS 234          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRPB (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rsmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:   13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVS 234          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRP8 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M18 GN=rsmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:    5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRP1 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M1 GN=rsmA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.642e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:    5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEVKDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRU0 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rsmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 70/233 (30.04%), Postives = 122/233 (52.36%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A +     V+EIGPG G+LT  L    A V+A E D  ++ ++ +     D ++V+ +D +K  ++S +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VP+T F P P VD+A++   +++      VT    FF +    F
Sbjct:    5 DYSVTRAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDRSVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLIPILADTLRDFDNVQVINQDILKSDLQSQI----KQFKNPDLPLKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPKTVFVPAPNVDSAILKM-VRRPEPLIEVTDEDFFFRVAKVGF 230          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRPG (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rsmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:    5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEIKDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRP6 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus pyogenes serotype M6 GN=rsmA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 72/231 (31.17%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D  +V ++ +     D ++V+ +D +K  +++ +    ++ K+     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:    5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFLAENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRR---DQPLIEIKDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRE4 (Ribosomal RNA small subunit methyltransferase A OS=Streptococcus equi subsp. equi (strain 4047) GN=rsmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 71/231 (30.74%), Postives = 123/231 (53.25%), Query Frame = 1
Query:   94 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVS 780
            DY  T   L+  G   +KS GQ+++ ++ I  ++   A + +   V+EIGPG G+LT  L    A V+A E D+ +V ++ +     D ++V+ +D +K  +++ +    ++  +     KVVAN+P+ I+T ++  L+     F E V+++Q E A R+  EP+  T  Y  ++I V +Y   +  F VPRT F P P VD+A++    +   D P +    + FF  VS
Sbjct:    5 DYSVTKSILDRYGFTFKKSFGQNFLTDTNILQKIVDTAEIDKSVNVIEIGPGIGALTEFLAERAAEVMAFEIDERLVPILADTLRDFDNVQVVNQDILKADLQTQL----KQFSNPDLPIKVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQYYMTAKIAFVVPRTVFVPAPNVDSAILKMTRR---DQPLIEVQDEDFFFRVS 226          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_CHLPN (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae GN=rsmA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.144e-24
Identity = 73/219 (33.33%), Postives = 125/219 (57.08%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            P+KSL Q+++++  I  ++ A + V   D VLEIGPG G+LT  L+ AGA V+AIEKD            S+++L +  E    C      L  ++    + G  +VVAN+P++I+T ++ +L L   D +  V +++Q+E A R+V +P  R  +Y  + IF+ F+++  Y FKV  + F+P+P+V +AV+  K+K+     +      FF++  +AF
Sbjct:   20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPMFA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLLTKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASCFYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAF 224          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_STRPD1.642e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRPC1.642e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRPB1.642e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP81.642e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP11.642e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRU02.144e-2430.04Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRPG2.144e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRP62.144e-2431.17Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRE42.144e-2430.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_CHLPN2.144e-2433.33Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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