CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_DESVH (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rsmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 63/219 (28.77%), Postives = 114/219 (52.05%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVR-ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +KSLGQ+++ +  I  ++AA   +   D V+EIGPG G+LT  +  AG A +  +EKD H     R    A   + +V+  D         +L  +ER  ++  + KV+ N+P+N+++ ++  +            ++Q+E   R+V  P  R  +Y  +++++  +++PE+ F VP   F P+PKVD+AV+ F  +  TD P    +K    ++   F
Sbjct:    6 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHHWAREHRLHPLAGTPEAQVVLTD--------ALLFPWERLDAAHPW-KVIGNLPYNVASPLMWDICSRAPGLLRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLARVLRLCF 211          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRAW (Ribosomal RNA small subunit methyltransferase A OS=Streptomyces avermitilis GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 58/218 (26.61%), Postives = 108/218 (49.54%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            P K  GQ++++++    ++   A V+  D+V+E+GPG GSLT  LL A   V+A+E D  + G +    A+  ++    E F   H      ++  R         +VAN+P+N++  V+  +L         ++++Q E A RL  +P  R   Y   ++  N+++E +    + R  F+P P VD+ +V+  +++        S    F++V +AF
Sbjct:   26 PTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLEAADRVIAVEIDDVLAGALPATIAA--RMPERAERFALVHSD----AMHVRELPGPPPTALVANLPYNVAVPVLLHMLDTFPSIERTLVMVQAEVADRLAADPGSRV--YGVPSVKANWHAEVKRAGSIGRNVFWPAPNVDSGLVSL-VRRTEPIKTTASKTEVFAVVDAAF 234          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHIE6 (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium etli (strain CIAT 652) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK+LGQ+++L+  +  ++A  A   EG  V E+GPG G LT  +L  GA  V+A+E+D   +  + E       +L+V++ D +K    S          +  G  K++AN+P+N+ T  ++  LLP      +  + L+ Q+E   R+V        Y  + +   + +E    F VP   F P PKV + VV
Sbjct:   22 RKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFES---------LAPEGAVKIIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATE-DDDHYGRLGVLCGWRTEARMAFDVPPQAFTPPPKVTSTVV 205          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PELUB (Ribosomal RNA small subunit methyltransferase A OS=Pelagibacter ubique GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 57/202 (28.22%), Postives = 112/202 (55.45%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH---IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI-KQLLPMGD--IFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 726
            +KSLGQ+++++ E+ +++ +   +   + VLEIGPG+G+LT  +L      L  +EKD  +  L++E+F +  ++K++ +D +K     I    LS+F              N+P+NIST+++ K +L +G    F  +VL+ Q+E A R++      S Y  ++I  ++    +    +   +F P+PK+D++++ F  K+
Sbjct:    6 KKSLGQNFLIDREVLEKIVSITDITNKE-VLEIGPGSGNLTTYILKKKPKKLYVVEKDDDLAILLKEKFDT--EIKIINDDILKVSESTISDQKLSVF-------------GNLPYNISTEILSKWILNIGSNFWFDSLVLMFQKEVADRIIS-EFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPRPKIDSSLLLFTPKE 190          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MANSM (Ribosomal RNA small subunit methyltransferase A OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 1
Query:  118 LNSK---GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR-----ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +NSK   G   RK  GQ+++ +  +   + AA   Q+G  ++EIGPG G+LT  + +    +  +E D+ +   +R      +  ++ +   +Q DF K +   H+    ++        +V  N+P+NIST +I  LL   D   ++  +LQ+E   RL   +  +  Y  + I   ++ +     +VP T F P PKVD+AVV
Sbjct:    1 MNSKRHLGHTARKRFGQNFLHDDNVIQGIVAAIYPQKGQFLVEIGPGLGALTEPVADQTDRLTVVELDRDLAQRLRHHPFLHQKLNVIETDAMQFDFGKLYEDEHLAEQGQK-------LRVFGNLPYNISTPLIFHLLKFYDKIQDMHFMLQKEVVKRLC-AAPNSKAYGRLTIMTQYFCQVMPVLEVPPTAFKPAPKVDSAVV 197          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXBU (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii GN=rsmA PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 47/189 (24.87%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +V  +++++     + + Q D ++    S           +    +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++
Sbjct:    7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAII 185          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXBR (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 47/189 (24.87%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +V  +++++     + + Q D ++    S           +    +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++
Sbjct:    7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTPPPRVESAII 185          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXB2 (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain CbuG_Q212) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 47/189 (24.87%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D+ +V  +++++     + + Q D ++    S           +    +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++
Sbjct:    7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAII 185          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: DIMT1_DROME (Probable dimethyladenosine transferase OS=Drosophila melanogaster GN=CG11837 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 62/197 (31.47%), Postives = 100/197 (50.76%), Query Frame = 1
Query:  145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 723
            K  GQH + N  +   +   AA++  D+VLEIGPGTG++T  +L     V+A E D  +   +++R  +     +L+VL  DF+K  +                F   +AN+P+ IS+ +I +LL    +F   VL+ Q E A RLV +P  +   Y  ++I     +  +   KV + NF P PKV+++VV  + K
Sbjct:   25 KDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAEL--------------PFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQREFAERLVAKPGDKL--YCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVVRLEPK 205          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_YERE8 (Ribosomal RNA small subunit methyltransferase A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 56/194 (28.87%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G F RK  GQ+++ +  + D + +A     G+ V+EIGPG G+LT  +      +  IE D+ +   +       D+L + QED +K       ++  E  + +    +V  N+P+NIST ++  L        ++  +LQ+E   RLV     +  Y  + +   +Y       +VP T F P PKVD+AVV
Sbjct:    7 QGHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEPVAARMDHMTVIELDRDLADRLASHPQLKDKLTIHQEDAMK-------INFSELAELAGQPLRVFGNLPYNISTPLMFHLFSYTSAIRDMHFMLQKEVVNRLV-AGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVV 192          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_DESVH8.166e-1628.77Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_STRAW1.067e-1526.61Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHIE61.067e-1529.90Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PELUB1.067e-1528.22Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MANSM1.067e-1528.29Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBU1.067e-1524.87Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBR1.067e-1524.87Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXB21.067e-1524.87Ribosomal RNA small subunit methyltransferase A OS... [more]
DIMT1_DROME1.067e-1531.47Probable dimethyladenosine transferase OS=Drosophi... [more]
RSMA_YERE81.393e-1528.87Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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