CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_DESVH (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rsmA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16 Identity = 63/219 (28.77%), Postives = 114/219 (52.05%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVR-ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +KSLGQ+++ + I ++AA + D V+EIGPG G+LT + AG A + +EKD H R A + +V+ D +L +ER ++ + KV+ N+P+N+++ ++ + ++Q+E R+V P R +Y +++++ +++PE+ F VP F P+PKVD+AV+ F + TD P +K ++ F Sbjct: 6 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHHWAREHRLHPLAGTPEAQVVLTD--------ALLFPWERLDAAHPW-KVIGNLPYNVASPLMWDICSRAPGLLRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLARVLRLCF 211
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRAW (Ribosomal RNA small subunit methyltransferase A OS=Streptomyces avermitilis GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 58/218 (26.61%), Postives = 108/218 (49.54%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 P K GQ++++++ ++ A V+ D+V+E+GPG GSLT LL A V+A+E D + G + A+ ++ E F H ++ R +VAN+P+N++ V+ +L ++++Q E A RL +P R Y ++ N+++E + + R F+P P VD+ +V+ +++ S F++V +AF Sbjct: 26 PTKQRGQNFVIDANTVRRIVRTAGVRPDDVVVEVGPGLGSLTLALLEAADRVIAVEIDDVLAGALPATIAA--RMPERAERFALVHSD----AMHVRELPGPPPTALVANLPYNVAVPVLLHMLDTFPSIERTLVMVQAEVADRLAADPGSRV--YGVPSVKANWHAEVKRAGSIGRNVFWPAPNVDSGLVSL-VRRTEPIKTTASKTEVFAVVDAAF 234
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHIE6 (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium etli (strain CIAT 652) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 58/194 (29.90%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK+LGQ+++L+ + ++A A EG V E+GPG G LT +L GA V+A+E+D + + E +L+V++ D +K S + G K++AN+P+N+ T ++ LLP + + L+ Q+E R+V Y + + + +E F VP F P PKV + VV Sbjct: 22 RKALGQNFLLDLNLTQKVARTAGGLEGMTVFEVGPGPGGLTRAILALGAKKVIAVERDARCLPALAEIADHYPGRLEVIEGDALKADFES---------LAPEGAVKIIANLPYNVGTQLLVNWLLPKAWPPFWQSLTLMFQKEVGERIVATE-DDDHYGRLGVLCGWRTEARMAFDVPPQAFTPPPKVTSTVV 205
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PELUB (Ribosomal RNA small subunit methyltransferase A OS=Pelagibacter ubique GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 57/202 (28.22%), Postives = 112/202 (55.45%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH---IRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI-KQLLPMGD--IFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 726 +KSLGQ+++++ E+ +++ + + + VLEIGPG+G+LT +L L +EKD + L++E+F + ++K++ +D +K I LS+F N+P+NIST+++ K +L +G F +VL+ Q+E A R++ S Y ++I ++ + + +F P+PK+D++++ F K+ Sbjct: 6 KKSLGQNFLIDREVLEKIVSITDITNKE-VLEIGPGSGNLTTYILKKKPKKLYVVEKDDDLAILLKEKFDT--EIKIINDDILKVSESTISDQKLSVF-------------GNLPYNISTEILSKWILNIGSNFWFDSLVLMFQKEVADRIIS-EFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPRPKIDSSLLLFTPKE 190
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MANSM (Ribosomal RNA small subunit methyltransferase A OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 1 Query: 118 LNSK---GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVR-----ERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +NSK G RK GQ+++ + + + AA Q+G ++EIGPG G+LT + + + +E D+ + +R + ++ + +Q DF K + H+ ++ +V N+P+NIST +I LL D ++ +LQ+E RL + + Y + I ++ + +VP T F P PKVD+AVV Sbjct: 1 MNSKRHLGHTARKRFGQNFLHDDNVIQGIVAAIYPQKGQFLVEIGPGLGALTEPVADQTDRLTVVELDRDLAQRLRHHPFLHQKLNVIETDAMQFDFGKLYEDEHLAEQGQK-------LRVFGNLPYNISTPLIFHLLKFYDKIQDMHFMLQKEVVKRLC-AAPNSKAYGRLTIMTQYFCQVMPVLEVPPTAFKPAPKVDSAVV 197
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXBU (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii GN=rsmA PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 47/189 (24.87%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D+ +V +++++ + + Q D ++ S + +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAII 185
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXBR (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 47/189 (24.87%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D+ +V +++++ + + Q D ++ S + +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAKYFCDNTYLFTVSPQAFTPPPRVESAII 185
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXB2 (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain CbuG_Q212) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 47/189 (24.87%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D+ +V +++++ + + Q D ++ S + +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAII 185
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: DIMT1_DROME (Probable dimethyladenosine transferase OS=Drosophila melanogaster GN=CG11837 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15 Identity = 62/197 (31.47%), Postives = 100/197 (50.76%), Query Frame = 1 Query: 145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 723 K GQH + N + + AA++ D+VLEIGPGTG++T +L V+A E D + +++R + +L+VL DF+K + F +AN+P+ IS+ +I +LL +F VL+ Q E A RLV +P + Y ++I + + KV + NF P PKV+++VV + K Sbjct: 25 KDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEIDTRLAAELQKRVQATPLQPKLQVLIGDFLKAEL--------------PFFDLCIANVPYQISSPLIFKLLLHRPLFRCAVLMFQREFAERLVAKPGDKL--YCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVVRLEPK 205
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_YERE8 (Ribosomal RNA small subunit methyltransferase A OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 56/194 (28.87%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G F RK GQ+++ + + D + +A G+ V+EIGPG G+LT + + IE D+ + + D+L + QED +K ++ E + + +V N+P+NIST ++ L ++ +LQ+E RLV + Y + + +Y +VP T F P PKVD+AVV Sbjct: 7 QGHFARKRFGQNFLNDQFVIDSIVSAIHPVPGEAVVEIGPGLGALTEPVAARMDHMTVIELDRDLADRLASHPQLKDKLTIHQEDAMK-------INFSELAELAGQPLRVFGNLPYNISTPLMFHLFSYTSAIRDMHFMLQKEVVNRLV-AGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVV 192 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |