CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_THESM (Probable ribosomal RNA small subunit methyltransferase A OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 54/195 (27.69%), Postives = 98/195 (50.26%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 723 P LGQ++++ ++ + A ++ + +LEIGPG G LT+ L V AIEKD ++ ++++ + + ++++Q D +K F KVV+N+P+ IS+ + +LL F VL+ Q E A R+V Y +++ V + ++ R F+P+PKVD+AV+ + K Sbjct: 16 PNSDLGQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAKRAGKVYAIEKDSRIIEILKKEY-NWSNVEIMQGDALKIKFPE--------------FNKVVSNLPYQISSPITFKLLKYD--FERAVLIYQLEFAQRMVAKP-GDKNYSRLSVMVQAKVNVDLVERIGRGAFYPKPKVDSAVIVMEPK 192
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SYNAS (Ribosomal RNA small subunit methyltransferase A OS=Syntrophus aciditrophicus (strain SB) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 58/217 (26.73%), Postives = 106/217 (48.85%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 P K LGQ ++ + + ++ A ++E + ++EIG G G +T+++ A V A+E D +V +++ER + V+ D +K L ++S K++ NIP++IS+ ++ +L S VL++Q+E A RL T Y + Y+ + V F+P+P+V + VV + + Y V + FF +V +AF Sbjct: 15 PVKRLGQCFLADFSVMKKIVELAEIKEDETIVEIGSGLGLMTSLMAERAAWVHAVEIDGKLVSVLKERLKEYHNVTVIHGDILKYDF------LTALGENSVKKIKIIGNIPYSISSPILFHILDHRKQISTAVLMMQKEVADRLCAVP-GTKAYGIPTVLFGLYARISRELTVAPGCFYPKPEVTSTVVKMLIPEEPLY-WVENDALFFRLVKAAF 223
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEWM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 G RK GQ+++ + + +++ A + +++EIGPG +LT + NA + +E D+ +V ++E D+L + Q D ++ F + KV N+P+NIST ++ L + + +LQ+E LRL S T Y + + ++ + +VP +F P PKVD+AVV Sbjct: 8 GHTARKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALTEPVANAIDKLTVVELDKDLVARLQEHPTLKDKLDIHQGDALQFD--------FSQLVEEGRQMKVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPGSFTPPPKVDSAVV 191
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RICPU (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia peacockii (strain Rustic) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 60/228 (26.32%), Postives = 112/228 (49.12%), Query Frame = 1 Query: 100 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI----------------RSHMLSLFERRKSSSGFAK-------VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 HA + +N P K GQ+++ +S + D++ A+ + E VLEIGPGTG LT +L ++ IE D+ + L+ E L ++++D +K ++ + + RR + G +K +++N+P++I T+++ + L + + + L+LQ+E R+ PS T Y +++ ++ E F V T F+P PKV +A+V Sbjct: 8 HAALHQVN-----PLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKREAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLKEARLITSMTLMLQKEVVERICAIPS--TKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIV 228
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RICCN (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia conorii GN=rsmA PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 65/255 (25.49%), Postives = 121/255 (47.45%), Query Frame = 1 Query: 100 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI----------------RSHMLSLFERRKSSSGFAK-------VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 HA + +N P K GQ+++ +S + D++ A+ + E VLEIGPGTG LT +L ++ IE D + L+ E L ++++D +K ++ + + + RR + G +K +++N+P++I T+++ + L + + + L+LQ+E R+ PS T Y +++ ++ E F V T F+P PKV +A+V KL + P++ + AF Sbjct: 8 HAALHQVN-----PLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPESLTVIETDARCLPLLNEIKEYYPNLNIIKQDALKINLTDLSYDIVNSVGFAYKKREVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEARLITSMTLMLQKEVVERICAIPS--TKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIV--KLIPLENPPSIALINKVEQITKLAF 253
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RALEH (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 58/195 (29.74%), Postives = 100/195 (51.28%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G RK GQ+++++ I + A + Q D+++EIGPG G+LT+ LL + +E D+ +V +R R+ ++L+V H + F++ ++V N+P+NIS+ ++ L+ D + +LQ+E R+V EP + I + V +Y E+ VP F P PKVD+AVV Sbjct: 7 QGHVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVVELDRDLVERLRRRYG--ERLQV--------HAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLLFHLMDFADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYM--EHVLDVPPGAFNPPPKVDSAVV 189
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PROM5 (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain MIT 9515) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 53/206 (25.73%), Postives = 109/206 (52.91%), Query Frame = 1 Query: 118 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-----FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFK 717 +N K +K GQH+++N+ I +++ A + E D +LEIGPG G+LT+ LL++ + L A+E D+ ++ L+ +F + + + Q D + ++ S + KV+ANIP+NI+ ++ + I + +++ L+Q++ R++ + +++ + S + VP ++F P PKV +++V F+ Sbjct: 1 MNFKNHHQKKRFGQHWLVNNLILEKIKEVAELDEKDFILEIGPGKGALTSKLLDSKISRLHAVELDKDLIDLLNNKFRNDKKFSLQQGDILSTNLDS----------INKKITKVIANIPYNITGPILDIFIGRLGIVSKNNYKKIIFLMQKDVVDRILSKE-SSKNAGAMSVRMQLISNIKRICDVPPSSFNPPPKVFSSLVVFE 195
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_METJA (Probable ribosomal RNA small subunit methyltransferase A OS=Methanocaldococcus jannaschii GN=rsmA PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 57/193 (29.53%), Postives = 98/193 (50.78%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFK 717 P+K LGQ ++++ ++ +A + + D+VLEIG G G LT L V IE D+ + + + ++++ D +K + + F KVVAN+P+ IS+ + +L+ G F VL+ Q E A R+V T +Y +++ V ++ E KVP + F+P+PKV +A+V K Sbjct: 4 PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAKE-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIK 181
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_JANSC (Ribosomal RNA small subunit methyltransferase A OS=Jannaschia sp. (strain CCS1) GN=rsmA PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 70/226 (30.97%), Postives = 114/226 (50.44%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPMG--DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 G RK+LGQ+++L+ + ++A A VLE+GPG G LT LL GA V+A+EKD + ++ E A +LKVL D ++ + + K+VAN+P+N+ T+ +++ L P + + L+ Q E A R+V +P +T Y + I + ++P +P F P PKV +AVV F A +PA + +V++AF Sbjct: 18 GLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLLAEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWAADL----------QAPRKIVANLPYNVGTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKT--YGRLAILSQWRADPRIVMGLPPEAFTPPPKVHSAVVHFTALPAPRFPA--DARVLTRVVAAAF 229
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_DESVV (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 64/222 (28.83%), Postives = 115/222 (51.80%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRER----FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +KSLGQ+++ + I ++AA + D V+EIGPG G+LT + AG A + +EKD H RE A + +V+ D +L +ER ++ + KV+ N+P+N+++ ++ + ++Q+E R+V P R +Y +++++ +++PE+ F VP F P+PKVD+AV+ F + TD P +K ++ F Sbjct: 6 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHHW---AREHHLHPLAGTPEAQVVLTD--------ALLFPWERLDAAHPW-KVIGNLPYNVASPLMWDICSRAPGLVRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLAHVLRLCF 211 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |