CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_THESM (Probable ribosomal RNA small subunit methyltransferase A OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 54/195 (27.69%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 723
            P   LGQ++++  ++  +    A ++  + +LEIGPG G LT+ L      V AIEKD  ++ ++++ + +   ++++Q D +K                   F KVV+N+P+ IS+ +  +LL     F   VL+ Q E A R+V        Y  +++ V      +   ++ R  F+P+PKVD+AV+  + K
Sbjct:   16 PNSDLGQNFLIVGDVIKREVERAEIKNSETILEIGPGLGVLTDELAKRAGKVYAIEKDSRIIEILKKEY-NWSNVEIMQGDALKIKFPE--------------FNKVVSNLPYQISSPITFKLLKYD--FERAVLIYQLEFAQRMVAKP-GDKNYSRLSVMVQAKVNVDLVERIGRGAFYPKPKVDSAVIVMEPK 192          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SYNAS (Ribosomal RNA small subunit methyltransferase A OS=Syntrophus aciditrophicus (strain SB) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 58/217 (26.73%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            P K LGQ ++ +  +  ++   A ++E + ++EIG G G +T+++    A V A+E D  +V +++ER      + V+  D +K         L    ++S    K++ NIP++IS+ ++  +L      S  VL++Q+E A RL      T  Y    +    Y+    +  V    F+P+P+V + VV   + +   Y  V +   FF +V +AF
Sbjct:   15 PVKRLGQCFLADFSVMKKIVELAEIKEDETIVEIGSGLGLMTSLMAERAAWVHAVEIDGKLVSVLKERLKEYHNVTVIHGDILKYDF------LTALGENSVKKIKIIGNIPYSISSPILFHILDHRKQISTAVLMMQKEVADRLCAVP-GTKAYGIPTVLFGLYARISRELTVAPGCFYPKPEVTSTVVKMLIPEEPLY-WVENDALFFRLVKAAF 223          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEWM (Ribosomal RNA small subunit methyltransferase A OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 53/193 (27.46%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            G   RK  GQ+++ +  + +++  A +     +++EIGPG  +LT  + NA   +  +E D+ +V  ++E     D+L + Q D ++          F +        KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   S  T  Y  + +   ++ +     +VP  +F P PKVD+AVV
Sbjct:    8 GHTARKRFGQNFLTDHNVINRIVGAISPDNDHVMVEIGPGLAALTEPVANAIDKLTVVELDKDLVARLQEHPTLKDKLDIHQGDALQFD--------FSQLVEEGRQMKVFGNLPYNISTPLMFHLFEFAEQIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPGSFTPPPKVDSAVV 191          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RICPU (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia peacockii (strain Rustic) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 60/228 (26.32%), Postives = 112/228 (49.12%), Query Frame = 1
Query:  100 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI----------------RSHMLSLFERRKSSSGFAK-------VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            HA +  +N     P K  GQ+++ +S + D++  A+ + E   VLEIGPGTG LT  +L     ++  IE D+  + L+ E       L ++++D +K ++                +     +  RR +  G +K       +++N+P++I T+++ + L    + + + L+LQ+E   R+   PS  T  Y  +++     ++ E  F V  T F+P PKV +A+V
Sbjct:    8 HAALHQVN-----PLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKREAKPITNRRANDIGESKAIDYKVTIISNLPYHIGTELVIRWLKEARLITSMTLMLQKEVVERICAIPS--TKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIV 228          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RICCN (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia conorii GN=rsmA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 65/255 (25.49%), Postives = 121/255 (47.45%), Query Frame = 1
Query:  100 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI----------------RSHMLSLFERRKSSSGFAK-------VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            HA +  +N     P K  GQ+++ +S + D++  A+ + E   VLEIGPGTG LT  +L     ++  IE D   + L+ E       L ++++D +K ++                +  +  +  RR +  G +K       +++N+P++I T+++ + L    + + + L+LQ+E   R+   PS  T  Y  +++     ++ E  F V  T F+P PKV +A+V  KL    + P++        +   AF
Sbjct:    8 HAALHQVN-----PLKKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPESLTVIETDARCLPLLNEIKEYYPNLNIIKQDALKINLTDLSYDIVNSVGFAYKKREVKPITNRRANDIGESKSIDYKVTIISNLPYHIGTELVIRWLKEARLITSMTLMLQKEVVERICAIPS--TKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIV--KLIPLENPPSIALINKVEQITKLAF 253          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RALEH (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 58/195 (29.74%), Postives = 100/195 (51.28%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G   RK  GQ+++++  I   +  A + Q  D+++EIGPG G+LT+ LL     +  +E D+ +V  +R R+   ++L+V        H    +   F++        ++V N+P+NIS+ ++  L+   D   +   +LQ+E   R+V EP  +      I + V +Y   E+   VP   F P PKVD+AVV
Sbjct:    7 QGHVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVVELDRDLVERLRRRYG--ERLQV--------HAGDALAFDFDKLAVPGRPLRIVGNLPYNISSPLLFHLMDFADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYM--EHVLDVPPGAFNPPPKVDSAVV 189          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PROM5 (Ribosomal RNA small subunit methyltransferase A OS=Prochlorococcus marinus (strain MIT 9515) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 53/206 (25.73%), Postives = 109/206 (52.91%), Query Frame = 1
Query:  118 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-----FSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFK 717
            +N K    +K  GQH+++N+ I +++   A + E D +LEIGPG G+LT+ LL++  + L A+E D+ ++ L+  +F +  +  + Q D +  ++ S           +    KV+ANIP+NI+  ++   +    I     + +++ L+Q++   R++     +     +++ +   S  +    VP ++F P PKV +++V F+
Sbjct:    1 MNFKNHHQKKRFGQHWLVNNLILEKIKEVAELDEKDFILEIGPGKGALTSKLLDSKISRLHAVELDKDLIDLLNNKFRNDKKFSLQQGDILSTNLDS----------INKKITKVIANIPYNITGPILDIFIGRLGIVSKNNYKKIIFLMQKDVVDRILSKE-SSKNAGAMSVRMQLISNIKRICDVPPSSFNPPPKVFSSLVVFE 195          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_METJA (Probable ribosomal RNA small subunit methyltransferase A OS=Methanocaldococcus jannaschii GN=rsmA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 57/193 (29.53%), Postives = 98/193 (50.78%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFK 717
            P+K LGQ ++++    ++   +A + + D+VLEIG G G LT  L      V  IE D+ +     +     + ++++  D +K  +            +   F KVVAN+P+ IS+ +  +L+  G  F   VL+ Q E A R+V     T +Y  +++ V   ++ E   KVP + F+P+PKV +A+V  K
Sbjct:    4 PKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL------------NKLDFNKVVANLPYQISSPITFKLIKRG--FDLAVLMYQYEFAKRMVAKE-GTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIK 181          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_JANSC (Ribosomal RNA small subunit methyltransferase A OS=Jannaschia sp. (strain CCS1) GN=rsmA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 70/226 (30.97%), Postives = 114/226 (50.44%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPMG--DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            G   RK+LGQ+++L+  +  ++A  A       VLE+GPG G LT  LL  GA  V+A+EKD   + ++ E  A    +LKVL  D ++    + +              K+VAN+P+N+ T+ +++ L P      +  + L+ Q E A R+V +P  +T  Y  + I   + ++P     +P   F P PKV +AVV F    A  +PA    +    +V++AF
Sbjct:   18 GLSARKALGQNFLLDLNLTAKIARLAGDLTSVDVLEVGPGPGGLTRGLLAEGARRVVAVEKDPRCLPVLAEIEAIYPGRLKVLNADALELDWAADL----------QAPRKIVANLPYNVGTELLVRWLTPASWPPPWESLTLMFQREVAERIVAQPGSKT--YGRLAILSQWRADPRIVMGLPPEAFTPPPKVHSAVVHFTALPAPRFPA--DARVLTRVVAAAF 229          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_DESVV (Ribosomal RNA small subunit methyltransferase A OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 64/222 (28.83%), Postives = 115/222 (51.80%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRER----FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +KSLGQ+++ +  I  ++AA   +   D V+EIGPG G+LT  +  AG A +  +EKD H     RE      A   + +V+  D         +L  +ER  ++  + KV+ N+P+N+++ ++  +            ++Q+E   R+V  P  R  +Y  +++++  +++PE+ F VP   F P+PKVD+AV+ F  +  TD P    +K    ++   F
Sbjct:    6 KKSLGQNFLKDRNIAARIAAQLHIGPDDWVIEIGPGPGALTRHIHAAGPARLFLLEKDHHW---AREHHLHPLAGTPEAQVVLTD--------ALLFPWERLDAAHPW-KVIGNLPYNVASPLMWDICSRAPGLVRASFMIQKEVGERIVAAPGSR--QYGALSVWLQCFTKPEWCFVVPPHVFTPRPKVDSAVLAFTPR--TDRPDAVQSKRLAHVLRLCF 211          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_THESM1.393e-1527.69Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_SYNAS1.393e-1526.73Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEWM1.393e-1527.46Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RICPU1.393e-1526.32Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RICCN1.393e-1525.49Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RALEH1.393e-1529.74Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PROM51.393e-1525.73Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_METJA1.393e-1529.53Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_JANSC1.393e-1530.97Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_DESVV1.393e-1528.83Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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