CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BURCM (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 58/202 (28.71%), Postives = 100/202 (49.50%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G F RK GQ+++++ + D + G ++EIGPG G+LT L+ AT + A+E D+ ++G +++RF + +L L DF SL ++V N+P+NIS+ ++ L+ D + +LQ E R+V EP T + +++ + + E VP +F P PKVD+A+V Sbjct: 8 QGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVELDRDLIGRLQQRFGPLLELHAGDALAFDFRSLAAPGDKPSL-----------RIVGNLPYNISSPLLFHLMTFADAVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVMEKMLDVPPESFQPPPKVDSAIV 196
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BURA4 (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia ambifaria (strain MC40-6) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15 Identity = 58/202 (28.71%), Postives = 100/202 (49.50%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G F RK GQ+++++ + D + G ++EIGPG G+LT L+ AT + A+E D+ ++G +++RF + +L L DF SL ++V N+P+NIS+ ++ L+ D + +LQ E R+V EP T + +++ + + E VP +F P PKVD+A+V Sbjct: 8 QGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVELDRDLIGRLQQRFGPLLELHAGDALAFDFRSLAAPGDKPSL-----------RIVGNLPYNISSPLLFHLMTFADAVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVMEKMLDVPPESFQPPPKVDSAIV 196
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SERP5 (Ribosomal RNA small subunit methyltransferase A OS=Serratia proteamaculans (strain 568) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 54/194 (27.84%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G F RK GQ+++ + + D + +A G+ V+EIGPG G+LT + + IE D+ + + D+L + Q+D + ++ E + + +V N+P+NIST ++ L ++ +LQ+E RLV + Y + + +Y +VP T+F P PKVD+AVV Sbjct: 7 QGHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALTEPVGARMDRMTVIELDRDLAARLANHPQLKDKLTIHQQD-------AMTVNFAEMAEQAGQPLRVFGNLPYNISTPLMFHLFSYTQAIRDMHFMLQKEVVNRLV-AGPNSKAYGRLTVMAQYYCNVIPVLEVPPTSFTPAPKVDSAVV 192
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHOS4 (Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 1 Query: 112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA 744 + + + G +K LGQ+++L+ + ++A A VLE+GPG G LT LL GA VLAIEKD + + E A+ +L+VL D ++ + + + ++VAN+P+N+ T+++ + L + + L+ Q+E A R+V + Y + + + ++P+ +P F P P + +AVV F +A +PA Sbjct: 12 EVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLTPPI----------RIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVAKP-GSKAYGRLALLSQWRTDPKIVLTLPPDAFTPPPSIHSAVVHFTRLEAPRHPA 215
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MYCGI (Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium gilvum (strain PYR-GCK) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 63/224 (28.12%), Postives = 108/224 (48.21%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSAF 789 PRKS GQ+++ ++ ++ +A++V D VLE+GPG GSLT LL+ GA V A+E D Q + + +++L VL D + F++ + +VAN+P+N++ + LL V++++Q E A RL EP +Y + V F+ V T F+P P+V + +V + + +P T + F ++ AF Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLGSLTLALLDRGARVTAVEIDPVLATQLPTTIAAHSHSEVNRLTVLNRDIL----------TFKQSDMTEMPTALVANLPYNVAVPALLHLLAEFPSIRTVMVMVQAEVAERLAAEPG--GKDYGVPSAKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAF 233
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LARHH (Ribosomal RNA small subunit methyltransferase A OS=Laribacter hongkongensis (strain HLHK9) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 61/218 (27.98%), Postives = 110/218 (50.46%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 P+K GQ+++ ++ I + AA + GD+V+EIGPG G+LT LL A + +E D+ ++ + F ++L + + D L+ + K+V N+P+NIST ++ L D +++ +LQ+E R+V +P ++Y + + + + E VP +F P PKVD+AVV +PA ++ ++V+ AF Sbjct: 6 PKKRFGQNFLQDAFIIHSIVAAVDARPGDVVVEIGPGLGALTRPLLRALPQLHVVEIDRDIIARLAAEFPP-ERLVIHEGD---------ALAFDFGALAHEQPLKLVGNLPYNISTPLLFHLATYADRVTDMHFMLQKEVVDRMVADPG--CADYGRLTVMLQYRFAMERLIDVPPESFDPPPKVDSAVVRMIPHAELPWPA-DDEENLSALVAQAF 210
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLI (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rsmA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15 Identity = 65/215 (30.23%), Postives = 107/215 (49.77%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD----QHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 756 G P K GQ+++++ ++ A V D V+E+GPG GSLT +L GAT+ A+E D + + G V E + +L V+ D + + + F S +VAN+P+N++T ++ LL D ++++Q+E A RL +P + Y ++ + +Y E + R F+P P VD+A+V F QA D PA T Sbjct: 25 GISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALT--VTPENVPDF----SDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGT 230
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANAC (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas axonopodis pv. citri GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 57/198 (28.79%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +NS P +KSLGQH++ + D++ A + G ++EIGPG G++T LL + IE D+ ++ + E A I L+++ D +LS+ + ++V N+P+NIS+ ++ L +++ +LQ+E R+ + Y +++ + Y E F VP F P PKVD+AVV Sbjct: 1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALRIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAAVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPKVDSAVV 188
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEFN (Ribosomal RNA small subunit methyltransferase A OS=Shewanella frigidimarina (strain NCIMB 400) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 G RK GQ+++ + + + A A +++EIGPG G+LT + + + +E D+ +V ++ D+L + Q D ++ F + + KV N+P+NIST ++ L + + +LQ+E LRL S T Y + + +Y + +VP T+F P PKVD+AV+ Sbjct: 8 GHTARKRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALTEPVADMIDNLTVVELDRDLVKRLQYHPVLKDKLTIHQGDALQFD--------FGQLQQPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYYCQVVPVLEVPPTSFTPAPKVDSAVI 191
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHOSK (Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 1 Query: 112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA 744 + + + G +K LGQ+++L+ + ++A A VLE+GPG G LT LL GA VLAIEKD + + E A+ +L+VL D ++ + + + ++VAN+P+N+ T+++ + L + + L+ Q+E A R+V + Y + + + ++P+ +P F P P + +AVV F +A +PA Sbjct: 12 EVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLAARLTPPI----------RIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVAKP-GSKAYGRLALLSQWRTDPKIVLTLPPEAFTPPPSIHSAVVHFTRLEAPRHPA 215 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |