CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BURCM (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 58/202 (28.71%), Postives = 100/202 (49.50%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G F RK  GQ+++++  + D +        G  ++EIGPG G+LT  L+   AT    + A+E D+ ++G +++RF  + +L     L  DF          SL           ++V N+P+NIS+ ++  L+   D   +   +LQ E   R+V EP   T  +  +++ + +    E    VP  +F P PKVD+A+V
Sbjct:    8 QGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVELDRDLIGRLQQRFGPLLELHAGDALAFDFRSLAAPGDKPSL-----------RIVGNLPYNISSPLLFHLMTFADAVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVMEKMLDVPPESFQPPPKVDSAIV 196          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BURA4 (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia ambifaria (strain MC40-6) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 58/202 (28.71%), Postives = 100/202 (49.50%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G F RK  GQ+++++  + D +        G  ++EIGPG G+LT  L+   AT    + A+E D+ ++G +++RF  + +L     L  DF          SL           ++V N+P+NIS+ ++  L+   D   +   +LQ E   R+V EP   T  +  +++ + +    E    VP  +F P PKVD+A+V
Sbjct:    8 QGHFARKRFGQNFLVDHGVIDSIVTTIGPARGQRMVEIGPGLGALTEPLIARLATPESPLHAVELDRDLIGRLQQRFGPLLELHAGDALAFDFRSLAAPGDKPSL-----------RIVGNLPYNISSPLLFHLMTFADAVIDQHFMLQNEVVERMVAEPG--TKAFSRLSVMLQYRYVMEKMLDVPPESFQPPPKVDSAIV 196          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SERP5 (Ribosomal RNA small subunit methyltransferase A OS=Serratia proteamaculans (strain 568) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 54/194 (27.84%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G F RK  GQ+++ +  + D + +A     G+ V+EIGPG G+LT  +      +  IE D+ +   +       D+L + Q+D       +  ++  E  + +    +V  N+P+NIST ++  L        ++  +LQ+E   RLV     +  Y  + +   +Y       +VP T+F P PKVD+AVV
Sbjct:    7 QGHFARKRFGQNFLTDQFVIDSIVSAIHPMPGEAVVEIGPGLGALTEPVGARMDRMTVIELDRDLAARLANHPQLKDKLTIHQQD-------AMTVNFAEMAEQAGQPLRVFGNLPYNISTPLMFHLFSYTQAIRDMHFMLQKEVVNRLV-AGPNSKAYGRLTVMAQYYCNVIPVLEVPPTSFTPAPKVDSAVV 192          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHOS4 (Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 1
Query:  112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA 744
            + + + G   +K LGQ+++L+  +  ++A  A       VLE+GPG G LT  LL  GA  VLAIEKD   +  + E  A+   +L+VL  D ++  + + +              ++VAN+P+N+ T+++ + L       +  + L+ Q+E A R+V     +  Y  + +   + ++P+    +P   F P P + +AVV F   +A  +PA
Sbjct:   12 EVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDVAARLTPPI----------RIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVAKP-GSKAYGRLALLSQWRTDPKIVLTLPPDAFTPPPSIHSAVVHFTRLEAPRHPA 215          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MYCGI (Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium gilvum (strain PYR-GCK) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 63/224 (28.12%), Postives = 108/224 (48.21%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSAF 789
            PRKS GQ+++ ++    ++ +A++V   D VLE+GPG GSLT  LL+ GA V A+E D     Q    +     + +++L VL  D +           F++   +     +VAN+P+N++   +  LL        V++++Q E A RL  EP     +Y   +  V F+        V  T F+P P+V + +V     + + +P  T   +  F ++  AF
Sbjct:   22 PRKSFGQNFVHDANTVRRIVSASSVNRSDHVLEVGPGLGSLTLALLDRGARVTAVEIDPVLATQLPTTIAAHSHSEVNRLTVLNRDIL----------TFKQSDMTEMPTALVANLPYNVAVPALLHLLAEFPSIRTVMVMVQAEVAERLAAEPG--GKDYGVPSAKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDTEFQEQVFELIDIAF 233          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LARHH (Ribosomal RNA small subunit methyltransferase A OS=Laribacter hongkongensis (strain HLHK9) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 61/218 (27.98%), Postives = 110/218 (50.46%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            P+K  GQ+++ ++ I   + AA   + GD+V+EIGPG G+LT  LL A   +  +E D+ ++  +   F   ++L + + D          L+      +     K+V N+P+NIST ++  L    D  +++  +LQ+E   R+V +P    ++Y  + + + +    E    VP  +F P PKVD+AVV         +PA    ++  ++V+ AF
Sbjct:    6 PKKRFGQNFLQDAFIIHSIVAAVDARPGDVVVEIGPGLGALTRPLLRALPQLHVVEIDRDIIARLAAEFPP-ERLVIHEGD---------ALAFDFGALAHEQPLKLVGNLPYNISTPLLFHLATYADRVTDMHFMLQKEVVDRMVADPG--CADYGRLTVMLQYRFAMERLIDVPPESFDPPPKVDSAVVRMIPHAELPWPA-DDEENLSALVAQAF 210          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLI (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rsmA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 65/215 (30.23%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD----QHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 756
            G  P K  GQ+++++     ++   A V   D V+E+GPG GSLT  +L  GAT+ A+E D    + + G V E    +  +L V+  D +   +    +  F    S      +VAN+P+N++T ++  LL   D     ++++Q+E A RL  +P  +   Y   ++ + +Y   E    + R  F+P P VD+A+V F   QA D PA   T
Sbjct:   25 GISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALT--VTPENVPDF----SDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGT 230          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANAC (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas axonopodis pv. citri GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 57/198 (28.79%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +NS    P +KSLGQH++ +    D++  A   + G  ++EIGPG G++T  LL     +  IE D+ ++  + E  A I  L+++  D         +LS+     +     ++V N+P+NIS+ ++   L      +++  +LQ+E   R+      +  Y  +++ +  Y E    F VP   F P PKVD+AVV
Sbjct:    1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALRIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAAVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCEVTALFVVPPGAFRPPPKVDSAVV 188          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEFN (Ribosomal RNA small subunit methyltransferase A OS=Shewanella frigidimarina (strain NCIMB 400) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            G   RK  GQ+++ +  +   +  A A     +++EIGPG G+LT  + +    +  +E D+ +V  ++      D+L + Q D ++          F + +      KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   S  T  Y  + +   +Y +     +VP T+F P PKVD+AV+
Sbjct:    8 GHTARKRFGQNFLTDQGVISSIVGAIAPDNDHVMVEIGPGLGALTEPVADMIDNLTVVELDRDLVKRLQYHPVLKDKLTIHQGDALQFD--------FGQLQQPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYYCQVVPVLEVPPTSFTPAPKVDSAVI 191          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHOSK (Ribosomal RNA small subunit methyltransferase A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 1
Query:  112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG--DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA 744
            + + + G   +K LGQ+++L+  +  ++A  A       VLE+GPG G LT  LL  GA  VLAIEKD   +  + E  A+   +L+VL  D ++  + + +              ++VAN+P+N+ T+++ + L       +  + L+ Q+E A R+V     +  Y  + +   + ++P+    +P   F P P + +AVV F   +A  +PA
Sbjct:   12 EVIRAHGLSAKKQLGQNFLLDLNLTAKIARLAGDLTNSDVLEVGPGPGGLTRGLLAEGARRVLAIEKDARCLPALAEVAAAWPGRLEVLNADALEVDLAARLTPPI----------RIVANLPYNVGTELLTRWLSSDWPPFWESLTLMFQKEVAERIVAKP-GSKAYGRLALLSQWRTDPKIVLTLPPEAFTPPPSIHSAVVHFTRLEAPRHPA 215          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_BURCM1.393e-1528.71Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BURA41.393e-1528.71Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SERP51.819e-1527.84Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHOS41.819e-1527.91Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCGI1.819e-1528.13Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LARHH1.819e-1527.98Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BIFLI1.819e-1530.23Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_XANAC2.376e-1528.79Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEFN2.376e-1527.46Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHOSK2.376e-1527.91Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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