CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_METM5 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 60/216 (27.78%), Postives = 106/216 (49.07%), Query Frame = 1 Query: 145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 K LGQ ++ + + A + D+VLE+G G G+LT L V IE D+ + E + + ++++ D +K ++ + GF K+VAN+P+ IS+ + + L + F VL+ Q E A R+ +P T EY +++ V + ++ E+ KVP + F P+P V++A+V KL + V K F ++ + F Sbjct: 5 KKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKIAKKVYVIELDERLKPFADEITSEFENVEIIWSDALKVDLK------------NLGFNKIVANLPYQISSPITFKFLDVD--FETAVLMYQYEFAKRMAGKPD--TKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSAIV--KLTKREPKYFVKDEKFFKKVLKAMF 202
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ERYLH (Ribosomal RNA small subunit methyltransferase A OS=Erythrobacter litoralis (strain HTCC2594) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 62/192 (32.29%), Postives = 96/192 (50.00%), Query Frame = 1 Query: 145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 K+LGQ+++ ++++ D++A E VLEIGPG G LT LL AGA V AIE D+ + + E +L V+ D +K M F VVAN+P+N+ T + + L ++ + L+ Q+E A R+V + TS Y + + + S KV R+ F P PKV +A+V Sbjct: 20 KALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTRALLKAGARVTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAELMGEPF----------AVVANLPYNVGTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVS-TPGTSAYGRLAVLAQWRSAASMPMKVHRSAFTPPPKVMSAIV 200
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXBN (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 47/189 (24.87%), Postives = 97/189 (51.32%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQH++ +S + ++ +A Q+ D ++EIGPG G+LT+ LL + +E D +V +++++ + + Q D ++ S + +VV N+P+NIST ++ L ++ +LQ+E +R + + + +Y +++ ++ + Y F V F P P+V++A++ Sbjct: 7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDGDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAII 185
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLO (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum GN=rsmA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15 Identity = 64/217 (29.49%), Postives = 108/217 (49.77%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD----QHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS 762 G P K GQ+++++ ++ A V D V+E+GPG GSLT +L GAT+ A+E D + + G V E + +L V+ D + + + F S +VAN+P+N++T ++ LL D ++++Q+E A RL +P + Y ++ + +Y E + R F+P P VD+A+V F QA D A ++ S Sbjct: 25 GISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALT--VTPENVPDF----SDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNS 233
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANOR (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas oryzae pv. oryzae GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +NS P +KSLGQH++ + D++ A + G ++EIGPG G++T LL + IE D+ ++ + E A I L ++ D +LS+ + ++V N+P+NIS+ ++ L + +++ +LQ+E R+ + Y +++ + Y + F VP F P PKVD+AVV Sbjct: 1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAVVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPKVDSAVV 188
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANOP (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +NS P +KSLGQH++ + D++ A + G ++EIGPG G++T LL + IE D+ ++ + E A I L ++ D +LS+ + ++V N+P+NIS+ ++ L + +++ +LQ+E R+ + Y +++ + Y + F VP F P PKVD+AVV Sbjct: 1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAVVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPKVDSAVV 188
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANOM (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 1 Query: 118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +NS P +KSLGQH++ + D++ A + G ++EIGPG G++T LL + IE D+ ++ + E A I L ++ D +LS+ + ++V N+P+NIS+ ++ L + +++ +LQ+E R+ + Y +++ + Y + F VP F P PKVD+AVV Sbjct: 1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAVVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPKVDSAVV 188
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RICRS (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia rickettsii (strain Sheila Smith) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 59/228 (25.88%), Postives = 112/228 (49.12%), Query Frame = 1 Query: 100 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI----------------RSHMLSLFERRKSSSGFAK-------VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 HA + +N P + GQ+++ +S + D++ A+ + E VLEIGPGTG LT +L ++ IE D+ + L+ E L ++++D +K ++ + + RR + G +K +++N+P++I T+++ + L + + + L+LQ+E R+ PS T Y +++ ++ E F V T F+P PKV +A+V Sbjct: 8 HAALHQVN-----PLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKREAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEARLITSMTLMLQKEVVERICAIPS--TKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIV 228
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHISN (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium sp. (strain NGR234) GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 63/221 (28.51%), Postives = 108/221 (48.87%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLP--MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +K+LGQ+++L+ + ++A A E V+E+GPG G LT +L GA V+AIE+D + + E A +L V++ D +K FER + G +++AN+P+N+ T ++ LLP + + L++Q E LR+V Y + + + ++ F VP F P PKV + VV + D P + + + +AF Sbjct: 22 KKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVD--------FER--LAEGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIV-AGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVVHL---EPIDNPIPCAVSALEKVTQAAF 228
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RALSO (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia solanacearum GN=rsmA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15 Identity = 60/200 (30.00%), Postives = 99/200 (49.50%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV-----LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G RK GQ+++++ + + AA Q D+++EIGPG G+LT L+ T+ +E D+ +V ++ RF D+L V L DF H+ L ++V N+P+NIS+ ++ L D + +LQ+E R+V P + + + V +Y E +VP +F P PKVD+AVV Sbjct: 10 QGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRDLVARLQRRFG--DKLIVHAGDALAFDFGTLHVPGRSL-------------RIVGNLPYNISSPLLFHLSAFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYM--ELVLEVPPGSFNPPPKVDSAVV 192 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |