CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_METM5 (Probable ribosomal RNA small subunit methyltransferase A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 60/216 (27.78%), Postives = 106/216 (49.07%), Query Frame = 1
Query:  145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            K LGQ ++ +     +    A +   D+VLE+G G G+LT  L      V  IE D+ +     E  +  + ++++  D +K  ++            + GF K+VAN+P+ IS+ +  + L +   F   VL+ Q E A R+  +P   T EY  +++ V + ++ E+  KVP + F P+P V++A+V  KL +      V   K F  ++ + F
Sbjct:    5 KKLGQCFLKDKNFVKKAINRAEITNKDVVLELGLGEGALTKELAKIAKKVYVIELDERLKPFADEITSEFENVEIIWSDALKVDLK------------NLGFNKIVANLPYQISSPITFKFLDVD--FETAVLMYQYEFAKRMAGKPD--TKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSAIV--KLTKREPKYFVKDEKFFKKVLKAMF 202          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ERYLH (Ribosomal RNA small subunit methyltransferase A OS=Erythrobacter litoralis (strain HTCC2594) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 62/192 (32.29%), Postives = 96/192 (50.00%), Query Frame = 1
Query:  145 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL---PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            K+LGQ+++ ++++ D++A      E   VLEIGPG G LT  LL AGA V AIE D+  +  + E       +L V+  D +K      M   F           VVAN+P+N+ T +  + L        ++ + L+ Q+E A R+V  +  TS Y  + +   + S      KV R+ F P PKV +A+V
Sbjct:   20 KALGQNFLFDAQLLDRIAGIPGGLENRAVLEIGPGPGGLTRALLKAGARVTAIEMDRRCLPALAELSEVYPGKLSVIHGDAMKLDHAELMGEPF----------AVVANLPYNVGTALFVRWLGGETWPPQWTSLTLMFQQEVAQRIVS-TPGTSAYGRLAVLAQWRSAASMPMKVHRSAFTPPPKVMSAIV 200          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_COXBN (Ribosomal RNA small subunit methyltransferase A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 47/189 (24.87%), Postives = 97/189 (51.32%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQH++ +S +  ++ +A   Q+ D ++EIGPG G+LT+ LL     +  +E D  +V  +++++     + + Q D ++    S           +    +VV N+P+NIST ++  L        ++  +LQ+E  +R +   + + +Y  +++   ++ +  Y F V    F P P+V++A++
Sbjct:    7 RKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDGDLVAFLQKKYNQQKNITIYQNDALQFDFSS---------VKTDKPLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKE-VVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAII 185          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLO (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 64/217 (29.49%), Postives = 108/217 (49.77%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD----QHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS 762
            G  P K  GQ+++++     ++   A V   D V+E+GPG GSLT  +L  GAT+ A+E D    + + G V E    +  +L V+  D +   +    +  F    S      +VAN+P+N++T ++  LL   D     ++++Q+E A RL  +P  +   Y   ++ + +Y   E    + R  F+P P VD+A+V F   QA D  A  ++ S
Sbjct:   25 GISPTKKFGQNFVIDPGTVRRIVREAGVTAADHVMEVGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALT--VTPENVPDF----SDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVRFTRYQADDPAAPGASNS 233          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANOR (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas oryzae pv. oryzae GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +NS    P +KSLGQH++ +    D++  A   + G  ++EIGPG G++T  LL     +  IE D+ ++  + E  A I  L ++  D         +LS+     +     ++V N+P+NIS+ ++   L    + +++  +LQ+E   R+      +  Y  +++ +  Y +    F VP   F P PKVD+AVV
Sbjct:    1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAVVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPKVDSAVV 188          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANOP (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +NS    P +KSLGQH++ +    D++  A   + G  ++EIGPG G++T  LL     +  IE D+ ++  + E  A I  L ++  D         +LS+     +     ++V N+P+NIS+ ++   L    + +++  +LQ+E   R+      +  Y  +++ +  Y +    F VP   F P PKVD+AVV
Sbjct:    1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAVVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPKVDSAVV 188          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_XANOM (Ribosomal RNA small subunit methyltransferase A OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 56/198 (28.28%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  118 LNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +NS    P +KSLGQH++ +    D++  A   + G  ++EIGPG G++T  LL     +  IE D+ ++  + E  A I  L ++  D         +LS+     +     ++V N+P+NIS+ ++   L    + +++  +LQ+E   R+      +  Y  +++ +  Y +    F VP   F P PKVD+AVV
Sbjct:    1 MNSSFSAPAKKSLGQHFLADRYYIDRIVQAVDPRAGQHLVEIGPGQGAITFPLLRKHGALTVIEFDRDLIAPLTEAAAPIGALSIIHRD---------VLSVDFTALADGTPIRLVGNLPYNISSPILFHALDHAAVVADMHFMLQKEVVDRMA-AGPGSKVYGRLSVMLQAYCDVTALFVVPPGAFRPPPKVDSAVV 188          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RICRS (Ribosomal RNA small subunit methyltransferase A OS=Rickettsia rickettsii (strain Sheila Smith) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 59/228 (25.88%), Postives = 112/228 (49.12%), Query Frame = 1
Query:  100 HATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI----------------RSHMLSLFERRKSSSGFAK-------VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            HA +  +N     P +  GQ+++ +S + D++  A+ + E   VLEIGPGTG LT  +L     ++  IE D+  + L+ E       L ++++D +K ++                +     +  RR +  G +K       +++N+P++I T+++ + L    + + + L+LQ+E   R+   PS  T  Y  +++     ++ E  F V  T F+P PKV +A+V
Sbjct:    8 HAALHQVN-----PLRKHGQNFIFDSSLCDKIVRASNLAENSRVLEIGPGTGGLTRSILQKNPESLTVIETDERCLPLLNEIKEYYPNLNIIKQDALKINLTDLSCDIVNSVGFAYKKREAKPITNRRANDIGESKLIDYKVTIISNLPYHIGTELVIRWLKEARLITSMTLMLQKEVVERICAIPS--TKAYGRLSVICQLIAKVEKCFDVAPTAFYPPPKVYSAIV 228          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHISN (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium sp. (strain NGR234) GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 63/221 (28.51%), Postives = 108/221 (48.87%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLP--MGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +K+LGQ+++L+  +  ++A  A   E   V+E+GPG G LT  +L  GA  V+AIE+D   +  + E  A    +L V++ D +K          FER   + G  +++AN+P+N+ T  ++  LLP      +  + L++Q E  LR+V        Y  + +   + ++    F VP   F P PKV + VV     +  D P   +  +   +  +AF
Sbjct:   22 KKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGARKVVAIERDPRCLPALAEISAHYPGRLDVVEGDALKVD--------FER--LAEGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMIQREVGLRIV-AGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVVHL---EPIDNPIPCAVSALEKVTQAAF 228          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RALSO (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia solanacearum GN=rsmA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 60/200 (30.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV-----LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G   RK  GQ+++++  +   + AA   Q  D+++EIGPG G+LT  L+    T+  +E D+ +V  ++ RF   D+L V     L  DF   H+    L             ++V N+P+NIS+ ++  L    D   +   +LQ+E   R+V  P  +      + + V +Y   E   +VP  +F P PKVD+AVV
Sbjct:   10 QGHQARKRFGQNFLVDDGVIHAIVAAIDPQPDDVLVEIGPGLGALTVPLMERVPTLQVVELDRDLVARLQRRFG--DKLIVHAGDALAFDFGTLHVPGRSL-------------RIVGNLPYNISSPLLFHLSAFADRVRDQHFMLQKEVVDRMVAAPGSKAFSRLSVMLQVRYYM--ELVLEVPPGSFNPPPKVDSAVV 192          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_METM52.376e-1527.78Probable ribosomal RNA small subunit methyltransfe... [more]
RSMA_ERYLH2.376e-1532.29Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_COXBN2.376e-1524.87Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BIFLO2.376e-1529.49Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_XANOR3.103e-1528.28Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_XANOP3.103e-1528.28Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_XANOM3.103e-1528.28Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RICRS3.103e-1525.88Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHISN3.103e-1528.51Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RALSO3.103e-1530.00Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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