CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: ERMK_BACLI (rRNA adenine N-6-methyltransferase OS=Bacillus licheniformis GN=ermK PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.293e-15
Identity = 57/206 (27.67%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL-PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 726
            K LN +G +P  S GQH M N ++ +++   A +   D VLE+G G G+LT +L      VLA+E D   V ++  + A     K++ +D +K H+                   VV+NIP+ I+T ++K LL      F + ++++++  A R     ++ S      ++ +     E    + + +F P PKVD+A+V    K+
Sbjct:   11 KKLN-RGEYPNFS-GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTMLSQKAGKVLAVENDSKFVAILTRKTAQHPNTKIIHQDIMKIHLPKEKF-------------VVVSNIPYAITTPIMKMLLNNPASGFQKGIIVMEKGAAKRFTSKFIKNSYVLAWRMWFDIGIVRE----ISKEHFSPPPKVDSAMVRITRKK 197          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRCO (Ribosomal RNA small subunit methyltransferase A OS=Streptomyces coelicolor GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 56/217 (25.81%), Postives = 106/217 (48.85%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            P K  GQ++++++    ++   A V+  D+V+E+GPG GSLT  LL A   V A+E D  + G +    A+  ++    + F   H      ++  R         +VAN+P+N++  V+  +L         ++++Q E A RL      +  Y   ++  N+Y+E +    + R  F+P P VD+ +V+  ++++       S    F++V +AF
Sbjct:   26 PTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLEAADRVTAVEIDDVLAGALPATVAA--RMPARADRFALVHSD----AMHVRELPGPAPTALVANLPYNVAVPVLLHMLDTFPGIERTLVMVQAEVADRLA-AGPGSKVYGVPSVKANWYAEVKRAGSIGRNVFWPAPNVDSGLVSL-VRRSEPLRTTASKAEVFAVVDAAF 234          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SODGM (Ribosomal RNA small subunit methyltransferase A OS=Sodalis glossinidius (strain morsitans) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +G   RK  GQ+++ +S I D + AA   Q G  ++EIGPG G+LT  +      +  IE D+ +   +        +L ++Q+D +     +  LS  ER +      +V  N+P+NIST ++  L        ++  +LQ+E   RLV+       Y  +++   +Y +     +VP  +F P PKVD+AVV         +P V       ++ S AF
Sbjct:    7 QGHLARKRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALTEPVAERVDEMTVIELDRDLAARLASHPFLQSKLNIVQKDAMTVDFAA--LSA-ERGQP----LRVFGNLPYNISTPLMFHLFSYTHAIRDMHFMLQKEVVNRLVD-GPNGKAYGRLSVMAQYYCQIIPVLEVPPASFRPAPKVDSAVVRLVPYATLPFP-VKDLSKLATLTSLAF 218          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHELP (Ribosomal RNA small subunit methyltransferase A OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 55/204 (26.96%), Postives = 98/204 (48.04%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP 741
            G   RK  GQ+++ +S + +++  A +     +++EIGPG  +LT  +  +   +  +E D+ +V  ++      D+L++ Q D +K   +     L E  K      KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   +  T  Y  + +   ++ +     +VP   F P PKVD+AVV     +   YP
Sbjct:    8 GHTARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALTEPVAESIDKLTVVELDKDLVERLQTHPFLKDKLEIHQGDALKFDFK----QLVEEGKQ----MKVFGNLPYNISTPLMFHLFEFAEHIENMHFMLQKEVVLRL-SAAPGTKAYGRLTVMAQYFCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKEKPYP 202          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHIME (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium meliloti GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 54/194 (27.84%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG---DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +K+LGQ+++L+  +  ++A  A   E   V+E+GPG G LT  +L  GA  V+AIE+D   +  + E  A    +L ++++D +K    +           + G  +++AN+P+N+ T ++   L  G     +  + L+ Q E  LR+V        Y  + +   + ++    F VP   F P PKV + VV
Sbjct:   22 KKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEA----------LADGPVRIIANLPYNVGTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIV-AGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVV 204          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PARDP (Ribosomal RNA small subunit methyltransferase A OS=Paracoccus denitrificans (strain Pd 1222) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 64/207 (30.92%), Postives = 104/207 (50.24%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPMG--DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA 744
            +K LGQ+++L+  +  ++A AA    G  V+E+GPG G LT  LL  GA  VLAIEKD   +  + E   A   +L+V+  D ++    +H+              ++VAN+P+N+ T+ +I+ L P      +  + L+ Q+E A R+V +P  +   Y  + +   + +E      +P   F P PKV +AVV         YPA
Sbjct:   22 KKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGGLTRGLLAEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEIDPLAHLTPPI----------RIVANLPYNVGTELLIRWLTPAAWPPFWQSLTLMFQKEVAERIVAQPGGKA--YGRLAVLAQWRTEARIVMTLPPEAFVPAPKVHSAVVHLTALPGPRYPA 216          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_METPP (Ribosomal RNA small subunit methyltransferase A OS=Methylibium petroleiphilum (strain PM1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 49/189 (25.93%), Postives = 98/189 (51.85%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQH++ ++ + D +      + G  ++EIGPG G++T+ L+     +  +E D+ +   +R R     +L+V++ D ++    +  +       +S+G  ++V N+P+NIST ++  LLP      +   +LQ+E   R+      + +Y  +++ + +  + E    VP   F P P+V++AVV
Sbjct:    6 RKRFGQHFLSDAAVVDAIVGLIDPRPGQALVEIGPGLGAMTDPLVARCEHLTVVELDRDLAARLRRR----AELQVIESDVLRVDFAALAM-------ASAGRLRIVGNLPYNISTPILFHLLPAAAQVEDQHFMLQKEVVERMAAAPC-SKDYGRLSVMLQWRYDIESVLDVPPEAFEPPPRVNSAVV 182          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LEPCP (Ribosomal RNA small subunit methyltransferase A OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 54/217 (24.88%), Postives = 110/217 (50.69%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            PRK  GQH++ +  + D++      Q G+ ++EIGPG G++T+ ++     +  +E D+ +   +R+R     +L V++ D +K       +      +++    +V+ N+P+NIS+ ++  LL       +   +LQ+E   R+   +  + +Y  +++ + +  + E    VP  +F P P+VD+A+V  ++      PAV   K    +V+ AF
Sbjct:    5 PRKRFGQHFLADQSVLDRIVQLIDPQPGEALVEIGPGLGAMTDPVVERCKRLTVVELDRDLAARLRKR----PELTVIESDVLK-------VDFTALAQAAGRPVRVIGNLPYNISSPILFHLLEQVASVQDQHFMLQKEVVDRMAS-APGSKDYGRLSVMLQWRYQIESLLDVPPESFDPPPRVDSAIV--RMLPLAQPPAV-DPKLLGELVTVAF 206          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ERWCT (Ribosomal RNA small subunit methyltransferase A OS=Erwinia carotovora subsp. atroseptica GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 59/222 (26.58%), Postives = 105/222 (47.30%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +G F RK  GQ+++ +  + D + +A   Q G  V+EIGPG G+LT  +         IE D+ +   + +     D+L ++Q+D       +  +      + +    +V  N+P+NIST ++  L        ++  +LQ+E   RLV  P+ +T  +  +++   +Y +     +VP   F P PKVD+AVV         YP V+  +    + + AF
Sbjct:    7 QGHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALTAPIGERMDRFTVIELDRDLAARLEKHPTLKDKLTIIQQD-------AMTIDFAALAEQAGQPLRVFGNLPYNISTPLMFHLFTYTQSIRDMHFMLQKEVVNRLVAGPNSKT--FGRLSVMAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAELPYP-VSDIRMLSRITTEAF 218          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BLOPB (Ribosomal RNA small subunit methyltransferase A OS=Blochmannia pennsylvanicus (strain BPEN) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 53/219 (24.20%), Postives = 106/219 (48.40%), Query Frame = 1
Query:  109 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTK 759
            +K +  K    +K   Q ++ +  + D +      ++   +LEIGPG G+LT  +LN     +++ IE+D ++V  + + F    ++ +L +D +  +        F+         +++ N+P+NI+T++I  L    ++  ++  + Q+E A RL   +    EY  ++I   ++ +      +P T+FFP PKV++ V+       T YP V   K
Sbjct:    1 MKKIYYKNHLIKKKWSQVFLKDQNVIDTIVKTINPKKHQKILEIGPGLGALTKQILNIADLDSLILIERDSNLVNRLVQMFNK--KINILHQDIMTTNF-------FDLSHKVGQKLRLIGNLPYNIATELIVYLFQYTNVIYDMHFMFQKEVATRLYA-NPNKKEYGRLSIITQYHCKVVPLLTIPATSFFPIPKVESMVMRLLPHTNTPYPIVNIGK 209          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ERMK_BACLI5.293e-1527.67rRNA adenine N-6-methyltransferase OS=Bacillus lic... [more]
RSMA_STRCO6.913e-1525.81Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SODGM6.913e-1528.05Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHELP6.913e-1526.96Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RHIME6.913e-1527.84Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_PARDP6.913e-1530.92Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_METPP6.913e-1525.93Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_LEPCP6.913e-1524.88Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ERWCT6.913e-1526.58Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BLOPB6.913e-1524.20Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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