CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: ERMK_BACLI (rRNA adenine N-6-methyltransferase OS=Bacillus licheniformis GN=ermK PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.293e-15 Identity = 57/206 (27.67%), Postives = 100/206 (48.54%), Query Frame = 1 Query: 112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL-PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQ 726 K LN +G +P S GQH M N ++ +++ A + D VLE+G G G+LT +L VLA+E D V ++ + A K++ +D +K H+ VV+NIP+ I+T ++K LL F + ++++++ A R ++ S ++ + E + + +F P PKVD+A+V K+ Sbjct: 11 KKLN-RGEYPNFS-GQHLMHNKKLIEEIVDRANISIDDTVLELGAGKGALTTMLSQKAGKVLAVENDSKFVAILTRKTAQHPNTKIIHQDIMKIHLPKEKF-------------VVVSNIPYAITTPIMKMLLNNPASGFQKGIIVMEKGAAKRFTSKFIKNSYVLAWRMWFDIGIVRE----ISKEHFSPPPKVDSAMVRITRKK 197
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_STRCO (Ribosomal RNA small subunit methyltransferase A OS=Streptomyces coelicolor GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 56/217 (25.81%), Postives = 106/217 (48.85%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 P K GQ++++++ ++ A V+ D+V+E+GPG GSLT LL A V A+E D + G + A+ ++ + F H ++ R +VAN+P+N++ V+ +L ++++Q E A RL + Y ++ N+Y+E + + R F+P P VD+ +V+ ++++ S F++V +AF Sbjct: 26 PTKQRGQNFVIDANTVRRIVRTAEVRPDDVVVEVGPGLGSLTLALLEAADRVTAVEIDDVLAGALPATVAA--RMPARADRFALVHSD----AMHVRELPGPAPTALVANLPYNVAVPVLLHMLDTFPGIERTLVMVQAEVADRLA-AGPGSKVYGVPSVKANWYAEVKRAGSIGRNVFWPAPNVDSGLVSL-VRRSEPLRTTASKAEVFAVVDAAF 234
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SODGM (Ribosomal RNA small subunit methyltransferase A OS=Sodalis glossinidius (strain morsitans) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 62/221 (28.05%), Postives = 104/221 (47.06%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +G RK GQ+++ +S I D + AA Q G ++EIGPG G+LT + + IE D+ + + +L ++Q+D + + LS ER + +V N+P+NIST ++ L ++ +LQ+E RLV+ Y +++ +Y + +VP +F P PKVD+AVV +P V ++ S AF Sbjct: 7 QGHLARKRFGQNFLHDSSIIDAIVAAIHPQPGQAIVEIGPGLGALTEPVAERVDEMTVIELDRDLAARLASHPFLQSKLNIVQKDAMTVDFAA--LSA-ERGQP----LRVFGNLPYNISTPLMFHLFSYTHAIRDMHFMLQKEVVNRLVD-GPNGKAYGRLSVMAQYYCQIIPVLEVPPASFRPAPKVDSAVVRLVPYATLPFP-VKDLSKLATLTSLAF 218
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHELP (Ribosomal RNA small subunit methyltransferase A OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 55/204 (26.96%), Postives = 98/204 (48.04%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYP 741 G RK GQ+++ +S + +++ A + +++EIGPG +LT + + + +E D+ +V ++ D+L++ Q D +K + L E K KV N+P+NIST ++ L + + +LQ+E LRL + T Y + + ++ + +VP F P PKVD+AVV + YP Sbjct: 8 GHTARKRFGQNFLTDSNVINRIVGAISPDNDHVMVEIGPGLAALTEPVAESIDKLTVVELDKDLVERLQTHPFLKDKLEIHQGDALKFDFK----QLVEEGKQ----MKVFGNLPYNISTPLMFHLFEFAEHIENMHFMLQKEVVLRL-SAAPGTKAYGRLTVMAQYFCQVMPVLEVPPGCFTPPPKVDSAVVRLVPYKEKPYP 202
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RHIME (Ribosomal RNA small subunit methyltransferase A OS=Rhizobium meliloti GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 54/194 (27.84%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG---DIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +K+LGQ+++L+ + ++A A E V+E+GPG G LT +L GA V+AIE+D + + E A +L ++++D +K + + G +++AN+P+N+ T ++ L G + + L+ Q E LR+V Y + + + ++ F VP F P PKV + VV Sbjct: 22 KKALGQNFLLDLNLTQKIARTAGPLEDVTVIEVGPGPGGLTRAILALGAKKVVAIERDSRCLPALAEIGAHYPGRLDIIEDDALKVDFEA----------LADGPVRIIANLPYNVGTQLLVNWLLPGLWPPFWQSMTLMFQREVGLRIV-AGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVV 204
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_PARDP (Ribosomal RNA small subunit methyltransferase A OS=Paracoccus denitrificans (strain Pd 1222) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 64/207 (30.92%), Postives = 104/207 (50.24%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD-VIKQLLPMG--DIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPA 744 +K LGQ+++L+ + ++A AA G V+E+GPG G LT LL GA VLAIEKD + + E A +L+V+ D ++ +H+ ++VAN+P+N+ T+ +I+ L P + + L+ Q+E A R+V +P + Y + + + +E +P F P PKV +AVV YPA Sbjct: 22 KKQLGQNFLLDLNLTAKIARAAGDLTGCDVIEVGPGPGGLTRGLLAEGARHVLAIEKDARALPALAEIATAYPGRLEVIHGDALEIDPLAHLTPPI----------RIVANLPYNVGTELLIRWLTPAAWPPFWQSLTLMFQKEVAERIVAQPGGKA--YGRLAVLAQWRTEARIVMTLPPEAFVPAPKVHSAVVHLTALPGPRYPA 216
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_METPP (Ribosomal RNA small subunit methyltransferase A OS=Methylibium petroleiphilum (strain PM1) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 49/189 (25.93%), Postives = 98/189 (51.85%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQH++ ++ + D + + G ++EIGPG G++T+ L+ + +E D+ + +R R +L+V++ D ++ + + +S+G ++V N+P+NIST ++ LLP + +LQ+E R+ + +Y +++ + + + E VP F P P+V++AVV Sbjct: 6 RKRFGQHFLSDAAVVDAIVGLIDPRPGQALVEIGPGLGAMTDPLVARCEHLTVVELDRDLAARLRRR----AELQVIESDVLRVDFAALAM-------ASAGRLRIVGNLPYNISTPILFHLLPAAAQVEDQHFMLQKEVVERMAAAPC-SKDYGRLSVMLQWRYDIESVLDVPPEAFEPPPRVNSAVV 182
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_LEPCP (Ribosomal RNA small subunit methyltransferase A OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 54/217 (24.88%), Postives = 110/217 (50.69%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 PRK GQH++ + + D++ Q G+ ++EIGPG G++T+ ++ + +E D+ + +R+R +L V++ D +K + +++ +V+ N+P+NIS+ ++ LL + +LQ+E R+ + + +Y +++ + + + E VP +F P P+VD+A+V ++ PAV K +V+ AF Sbjct: 5 PRKRFGQHFLADQSVLDRIVQLIDPQPGEALVEIGPGLGAMTDPVVERCKRLTVVELDRDLAARLRKR----PELTVIESDVLK-------VDFTALAQAAGRPVRVIGNLPYNISSPILFHLLEQVASVQDQHFMLQKEVVDRMAS-APGSKDYGRLSVMLQWRYQIESLLDVPPESFDPPPRVDSAIV--RMLPLAQPPAV-DPKLLGELVTVAF 206
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ERWCT (Ribosomal RNA small subunit methyltransferase A OS=Erwinia carotovora subsp. atroseptica GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 59/222 (26.58%), Postives = 105/222 (47.30%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +G F RK GQ+++ + + D + +A Q G V+EIGPG G+LT + IE D+ + + + D+L ++Q+D + + + + +V N+P+NIST ++ L ++ +LQ+E RLV P+ +T + +++ +Y + +VP F P PKVD+AVV YP V+ + + + AF Sbjct: 7 QGHFARKRFGQNFLNDHFVIDSIVSAIHPQPGQAVVEIGPGLGALTAPIGERMDRFTVIELDRDLAARLEKHPTLKDKLTIIQQD-------AMTIDFAALAEQAGQPLRVFGNLPYNISTPLMFHLFTYTQSIRDMHFMLQKEVVNRLVAGPNSKT--FGRLSVMAQYYCQIIPVLEVPPEAFKPAPKVDSAVVRLVPHAELPYP-VSDIRMLSRITTEAF 218
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BLOPB (Ribosomal RNA small subunit methyltransferase A OS=Blochmannia pennsylvanicus (strain BPEN) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 53/219 (24.20%), Postives = 106/219 (48.40%), Query Frame = 1 Query: 109 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTK 759 +K + K +K Q ++ + + D + ++ +LEIGPG G+LT +LN +++ IE+D ++V + + F ++ +L +D + + F+ +++ N+P+NI+T++I L ++ ++ + Q+E A RL + EY ++I ++ + +P T+FFP PKV++ V+ T YP V K Sbjct: 1 MKKIYYKNHLIKKKWSQVFLKDQNVIDTIVKTINPKKHQKILEIGPGLGALTKQILNIADLDSLILIERDSNLVNRLVQMFNK--KINILHQDIMTTNF-------FDLSHKVGQKLRLIGNLPYNIATELIVYLFQYTNVIYDMHFMFQKEVATRLYA-NPNKKEYGRLSIITQYHCKVVPLLTIPATSFFPIPKVESMVMRLLPHTNTPYPIVNIGK 209 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |