CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BLOFL (Ribosomal RNA small subunit methyltransferase A OS=Blochmannia floridanus GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 55/218 (25.23%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVS 780 K +K GQ ++ + I + + +++ V+EIGPG G+LT + + ++ IE+D ++V + F S ++K+ +D + + + ++ +++ N+P+NIST +I L +I ++ +LQ+E A R+V Y ++IF +Y + + +VP+ +F P PKV++ +V F + T+ P T S S+++ Sbjct: 7 KNHVIQKKWGQIFLKDQNIIHSIISILNLKKYQNVIEIGPGLGALTKPISDIIDFLILIERDPNLVNRLLHTFTS-KKVKIFNKDAMTIDFSKLLTNPNQK-------IRLIGNLPYNISTKLIIHLYKYINIIHDMHFMLQKEVAQRIVAQP-NNKAYGRLSIFAQYYCKVQALLEVPKKSFIPIPKVESMIVQF-IPYHTNNPYPTVNISLLSLLT 214
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLD (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum (strain DJO10A) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 64/215 (29.77%), Postives = 107/215 (49.77%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD----QHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 756 G P K GQ+++++ ++ A V + V+E+GPG GSLT +L GAT+ A+E D + + G V E + +L V+ D + + + F S +VAN+P+N++T ++ LL D ++++Q+E A RL +P + Y ++ + +Y E + R F+P P VD+A+V F QA D PA T Sbjct: 25 GISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALT--VTPENVPDF----SDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGT 230
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ACIC1 (Ribosomal RNA small subunit methyltransferase A OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rsmA PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 64/228 (28.07%), Postives = 113/228 (49.56%), Query Frame = 1 Query: 124 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF-----ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 S G PRK+ GQH++++ + ++A A + DI LEIGPG GSLT VLL +LA+E D+ + ++ E A D+L V+ D ++ ++ +VAN+P+N++ + ++ + V+++Q E A RL +P + Y +I + +Y V F+P+P+V++AVV +Q P V + F+++ +AF Sbjct: 25 SAGVRPRKTFGQHFVVDPGVLRKIARYAELSSEDIALEIGPGFGSLTLVLLPLVRRLLAVEIDRVLAAVLPETIRRRCPAFADRLVVVHGDVLRLTTLPDDPTV------------LVANLPYNVAVPAVLRVFERFSTVTRTVIMVQREVAERLCADPG--SPAYGAPSIKLRWYGRARIVGSVSADVFWPRPQVESAVVRID-RQPPPVPGV-DRAAVFAVIDAAF 236
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: DIM1_DEBHA (Dimethyladenosine transferase OS=Debaryomyces hansenii GN=DIM1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15 Identity = 61/207 (29.47%), Postives = 102/207 (49.28%), Query Frame = 1 Query: 112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 723 K LNS +F +LGQH + N + + A ++ DIVLE+GPGTG+LT +L V+A E D M + +R + +L +L DF+K + F ++N P+ IS+ ++ +LL +L+ Q E A+RL+ S Y ++ V ++ + KV + NF P P+V+++VV ++K Sbjct: 24 KHLNSVFKF-NTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQARKVIASEMDPRMAAELTKRVHGTPNQKKLDILLGDFIKTEL--------------PYFDVCISNTPYQISSPLVFKLLNQPRPPRVSILMFQREFAMRLLARP-GDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVESSVVRIEVK 214
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEPA (Ribosomal RNA small subunit methyltransferase A OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15 Identity = 52/193 (26.94%), Postives = 93/193 (48.19%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 G RK GQ+++ + + +++ A + +++EIGPG +LT + + ++ +E D+ +V ++E D+L++ Q D +K F + KV N+P+NIST ++ L + +LQ+E LRL S T Y + + ++ + +VP F P PKVD+AVV Sbjct: 8 GHTARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALTEPVASGIDKLIVVELDKDLVERLKEHPVLKDKLEIHQGDALKFD--------FNQLVREDKQMKVFGNLPYNISTPLMFHLFEFAQHIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPGCFTPPPKVDSAVV 191
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEDO (Ribosomal RNA small subunit methyltransferase A OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15 Identity = 52/193 (26.94%), Postives = 93/193 (48.19%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 G RK GQ+++ + I ++ A + +++EIGPG G++T + + + +E D+ +V ++ D+L + Q D ++ F + + KV N+P+NIST ++ L +I + +LQ+E LRL S Y + + +Y + +VP +F P PKVD+AVV Sbjct: 8 GHTARKRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAITEPVAMSIDKLSVVELDRDLVERLQNHPTLKDKLDIHQGDALQFD--------FSTLQQAGKKMKVFGNLPYNISTPLMFHLFEFAEIIETMHFMLQKEVVLRL-SASPGCKAYGRLTVMAQYYCQVVPVLEVPPHSFTPAPKVDSAVV 191
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEB9 (Ribosomal RNA small subunit methyltransferase A OS=Shewanella baltica (strain OS195) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15 Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 G RK GQ+++ + + D++ A A +++EIGPG G+LT + A + +E D+ +V + D+L + Q D ++ F + KV N+P+NIST ++ L + + +LQ+E LRL S Y + + ++ + +VP +F P PKVD+AVV Sbjct: 8 GHTARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALTEPVAEAVDNLTVVELDRDLVERLHHHPVLKDKLTIHQGDALQFD--------FGQLSVPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGCKAYGRLTVMAQYFCQVVPVLEVPPHSFTPAPKVDSAVV 191
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEB8 (Ribosomal RNA small subunit methyltransferase A OS=Shewanella baltica (strain OS185) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15 Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1 Query: 130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 G RK GQ+++ + + D++ A A +++EIGPG G+LT + A + +E D+ +V + D+L + Q D ++ F + KV N+P+NIST ++ L + + +LQ+E LRL S Y + + ++ + +VP +F P PKVD+AVV Sbjct: 8 GHTARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALTEPVAEAVDNLTVVELDRDLVERLHHHPVLKDKLTIHQGDALQFD--------FGQLSVPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGCKAYGRLTVMAQYFCQVVPVLEVPPHSFTPAPKVDSAVV 191
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_NEIMF (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15 Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQ+++ ++ I + A Q D+V+EIGPG ++T L + +E D+ +V ++ FA I + VLQ DF +G K+V N+P+NIST ++ +L + D ++ +LQ+E R+V + ++++Y + + + ++ + E VP +F P PKVD+AVV Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDF----------------NGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMV-AAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPKVDSAVV 182
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_NEIMB (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup B GN=rsmA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15 Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQ+++ ++ I + A Q D+V+EIGPG ++T L + +E D+ +V ++ FA I + VLQ DF +G K+V N+P+NIST ++ +L + D ++ +LQ+E R+V + ++++Y + + + ++ + E VP +F P PKVD+AVV Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDF----------------NGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMV-AAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPKVDSAVV 182 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |