CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BLOFL (Ribosomal RNA small subunit methyltransferase A OS=Blochmannia floridanus GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 55/218 (25.23%), Postives = 111/218 (50.92%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVS 780
            K    +K  GQ ++ +  I   + +   +++   V+EIGPG G+LT  + +    ++ IE+D ++V  +   F S  ++K+  +D +       + +  ++        +++ N+P+NIST +I  L    +I  ++  +LQ+E A R+V        Y  ++IF  +Y + +   +VP+ +F P PKV++ +V F +   T+ P  T   S  S+++
Sbjct:    7 KNHVIQKKWGQIFLKDQNIIHSIISILNLKKYQNVIEIGPGLGALTKPISDIIDFLILIERDPNLVNRLLHTFTS-KKVKIFNKDAMTIDFSKLLTNPNQK-------IRLIGNLPYNISTKLIIHLYKYINIIHDMHFMLQKEVAQRIVAQP-NNKAYGRLSIFAQYYCKVQALLEVPKKSFIPIPKVESMIVQF-IPYHTNNPYPTVNISLLSLLT 214          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BIFLD (Ribosomal RNA small subunit methyltransferase A OS=Bifidobacterium longum (strain DJO10A) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 64/215 (29.77%), Postives = 107/215 (49.77%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD----QHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTST 756
            G  P K  GQ+++++     ++   A V   + V+E+GPG GSLT  +L  GAT+ A+E D    + + G V E    +  +L V+  D +   +    +  F    S      +VAN+P+N++T ++  LL   D     ++++Q+E A RL  +P  +   Y   ++ + +Y   E    + R  F+P P VD+A+V F   QA D PA   T
Sbjct:   25 GISPTKKFGQNFVIDPGTVRRIVREAGVTAANHVMEVGPGLGSLTLAILETGATMTAVEIDPPLAERLPGTVAEFMPEATSRLTVVNRDALT--VTPENVPDF----SDDASFTLVANLPYNVATPILLTLLERFDNLGSFLVMVQKEVADRLAAKPGSKI--YGTPSVKLAWYGTAERVGTIGRNVFWPAPNVDSALVKFTRYQADD-PAAPGT 230          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_ACIC1 (Ribosomal RNA small subunit methyltransferase A OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rsmA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 64/228 (28.07%), Postives = 113/228 (49.56%), Query Frame = 1
Query:  124 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF-----ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            S G  PRK+ GQH++++  +  ++A  A +   DI LEIGPG GSLT VLL     +LA+E D+ +  ++ E       A  D+L V+  D ++        ++            +VAN+P+N++   + ++       +  V+++Q E A RL  +P   +  Y   +I + +Y        V    F+P+P+V++AVV    +Q    P V    + F+++ +AF
Sbjct:   25 SAGVRPRKTFGQHFVVDPGVLRKIARYAELSSEDIALEIGPGFGSLTLVLLPLVRRLLAVEIDRVLAAVLPETIRRRCPAFADRLVVVHGDVLRLTTLPDDPTV------------LVANLPYNVAVPAVLRVFERFSTVTRTVIMVQREVAERLCADPG--SPAYGAPSIKLRWYGRARIVGSVSADVFWPRPQVESAVVRID-RQPPPVPGV-DRAAVFAVIDAAF 236          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: DIM1_DEBHA (Dimethyladenosine transferase OS=Debaryomyces hansenii GN=DIM1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 61/207 (29.47%), Postives = 102/207 (49.28%), Query Frame = 1
Query:  112 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF---ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLK 723
            K LNS  +F   +LGQH + N  +   +   A ++  DIVLE+GPGTG+LT  +L     V+A E D  M   + +R     +  +L +L  DF+K  +                F   ++N P+ IS+ ++ +LL         +L+ Q E A+RL+      S Y  ++  V  ++   +  KV + NF P P+V+++VV  ++K
Sbjct:   24 KHLNSVFKF-NTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQARKVIASEMDPRMAAELTKRVHGTPNQKKLDILLGDFIKTEL--------------PYFDVCISNTPYQISSPLVFKLLNQPRPPRVSILMFQREFAMRLLARP-GDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVESSVVRIEVK 214          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEPA (Ribosomal RNA small subunit methyltransferase A OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 52/193 (26.94%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            G   RK  GQ+++ +  + +++  A +     +++EIGPG  +LT  + +    ++ +E D+ +V  ++E     D+L++ Q D +K          F +        KV  N+P+NIST ++  L         +  +LQ+E  LRL   S  T  Y  + +   ++ +     +VP   F P PKVD+AVV
Sbjct:    8 GHTARKRFGQNFLTDENVINRIVGAISPDNDHVMVEIGPGLAALTEPVASGIDKLIVVELDKDLVERLKEHPVLKDKLEIHQGDALKFD--------FNQLVREDKQMKVFGNLPYNISTPLMFHLFEFAQHIENMHFMLQKEVVLRL-SASPGTKAYGRLTVMAQYHCQVMPVLEVPPGCFTPPPKVDSAVV 191          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEDO (Ribosomal RNA small subunit methyltransferase A OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 52/193 (26.94%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            G   RK  GQ+++ +  I  ++  A +     +++EIGPG G++T  +  +   +  +E D+ +V  ++      D+L + Q D ++          F   + +    KV  N+P+NIST ++  L    +I   +  +LQ+E  LRL   S     Y  + +   +Y +     +VP  +F P PKVD+AVV
Sbjct:    8 GHTARKRFGQNFLTDDSIISRIVGAISPDNDHVMVEIGPGLGAITEPVAMSIDKLSVVELDRDLVERLQNHPTLKDKLDIHQGDALQFD--------FSTLQQAGKKMKVFGNLPYNISTPLMFHLFEFAEIIETMHFMLQKEVVLRL-SASPGCKAYGRLTVMAQYYCQVVPVLEVPPHSFTPAPKVDSAVV 191          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEB9 (Ribosomal RNA small subunit methyltransferase A OS=Shewanella baltica (strain OS195) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            G   RK  GQ+++ +  + D++  A A     +++EIGPG G+LT  +  A   +  +E D+ +V  +       D+L + Q D ++          F +        KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   S     Y  + +   ++ +     +VP  +F P PKVD+AVV
Sbjct:    8 GHTARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALTEPVAEAVDNLTVVELDRDLVERLHHHPVLKDKLTIHQGDALQFD--------FGQLSVPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGCKAYGRLTVMAQYFCQVVPVLEVPPHSFTPAPKVDSAVV 191          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_SHEB8 (Ribosomal RNA small subunit methyltransferase A OS=Shewanella baltica (strain OS185) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  130 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            G   RK  GQ+++ +  + D++  A A     +++EIGPG G+LT  +  A   +  +E D+ +V  +       D+L + Q D ++          F +        KV  N+P+NIST ++  L    +    +  +LQ+E  LRL   S     Y  + +   ++ +     +VP  +F P PKVD+AVV
Sbjct:    8 GHTARKRFGQNFLTDGNVIDRIVGAIAPDNHHVMVEIGPGLGALTEPVAEAVDNLTVVELDRDLVERLHHHPVLKDKLTIHQGDALQFD--------FGQLSVPGKKMKVFGNLPYNISTPLMFHLFEFAEQIETMHFMLQKEVVLRL-SASPGCKAYGRLTVMAQYFCQVVPVLEVPPHSFTPAPKVDSAVV 191          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_NEIMF (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQ+++ ++ I   +  A   Q  D+V+EIGPG  ++T  L      +  +E D+ +V  ++   FA    I +  VLQ DF                   +G  K+V N+P+NIST ++ +L  + D   ++  +LQ+E   R+V  + ++++Y  + + + ++ + E    VP  +F P PKVD+AVV
Sbjct:    7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDF----------------NGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMV-AAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPKVDSAVV 182          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_NEIMB (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup B GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQ+++ ++ I   +  A   Q  D+V+EIGPG  ++T  L      +  +E D+ +V  ++   FA    I +  VLQ DF                   +G  K+V N+P+NIST ++ +L  + D   ++  +LQ+E   R+V  + ++++Y  + + + ++ + E    VP  +F P PKVD+AVV
Sbjct:    7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDF----------------NGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVERMV-AAPKSNDYGRLGVMLQYFFDMEMLIDVPPESFDPAPKVDSAVV 182          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_BLOFL6.913e-1525.23Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BIFLD6.913e-1529.77Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_ACIC16.913e-1528.07Ribosomal RNA small subunit methyltransferase A OS... [more]
DIM1_DEBHA6.913e-1529.47Dimethyladenosine transferase OS=Debaryomyces hans... [more]
RSMA_SHEPA9.029e-1526.94Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEDO9.029e-1526.94Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEB99.029e-1527.46Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_SHEB89.029e-1527.46Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_NEIMF9.029e-1529.02Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_NEIMB9.029e-1529.02Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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