CX043893
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_NEIM0 (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup C (strain 053442) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14 Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQ+++ ++ I + A Q D+V+EIGPG ++T L + +E D+ +V ++ FA I + VLQ DF +G K+V N+P+NIST ++ +L + D ++ +LQ+E R+V + ++++Y + + + ++ + E VP +F P PKVD+AVV Sbjct: 7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDF----------------NGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVDRMV-AAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPKVDSAVV 182
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MYCVP (Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14 Identity = 61/224 (27.23%), Postives = 107/224 (47.77%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSAF 789 PRKS GQ+++ ++ ++ +A+++ D VLE+GPG GSLT LL+ GA V A+E D Q + + +++L VL D + F++ + +VAN+P+N++ + LL V++++Q E A RL EP +Y + V F+ V T F+P P+V + +V + + +P + F ++ AF Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLGSLTLALLDRGAKVTAVEIDPVLANQLPTTIAAHSHSEVNRLTVLNRDIL----------TFKQSDMTEMPTALVANLPYNVAVPALLHLLAEFPSIRTVMVMVQAEVAERLAAEPG--GKDYGVPSAKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAF 233
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MYCSS (Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium sp. (strain MCS) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14 Identity = 65/224 (29.02%), Postives = 111/224 (49.55%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAF 789 PRKS GQ+++ ++ ++ +A+ V D VL++GPG GSLT LL+ GA V A+E D Q + + I++L VL +D I + M S E + ++ +VAN+P+N++ + LL V++++Q E A RL +P +Y + V FY V T F+P P+V + +V + + +P ++ F ++ AF Sbjct: 22 PRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLGSLTLALLDRGAHVTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQD-----ILTLMPSDLENQPTA-----LVANLPYNVAVPALLHLLAEFPTIRSVMVMVQAEVAERLAADPG--GKDYGVPSAKVRFYGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAF 233
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_AQUAE (Ribosomal RNA small subunit methyltransferase A OS=Aquifex aeolicus GN=rsmA PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14 Identity = 65/222 (29.28%), Postives = 111/222 (50.00%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +KS GQH +++ + ++A ++EG+ V+E+G GTG+LT VLL L IE D+ MV E SI ++L+V+ ED F C + + KVV N+P+N+++ +I+ + D V ++Q+E A +L + +++FV + + Y VP F P PKV +AV+ KL + +P V K++ ++ F Sbjct: 5 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKL----QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVI--KLVKNEKFP-VKDLKNYKKFLTKIF 201
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RALEJ (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia eutropha (strain JMP134) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 57/195 (29.23%), Postives = 98/195 (50.26%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 +G RK GQ+++++ I + A D+++EIGPG G+LT+ LL + +E D+ +V +R R+ D+L+V H + F R ++V N+P+NIS+ ++ L+ D + +LQ+E R+V EP + + ++I + E+ VP +F P PKVD+AVV Sbjct: 7 QGHVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVPQMQVVELDRDLVERLRRRYG--DRLQV--------HAGDALAFDFGRLAVPGRPLRIVGNLPYNISSPLLFHLMDYADHVHDQHFMLQKEVVDRMVAEPG--SKAFGRLSIMLQVRYHMEHVLDVPPGSFNPPPKVDSAVV 189
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_POLNA (Ribosomal RNA small subunit methyltransferase A OS=Polaromonas naphthalenivorans (strain CJ2) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 60/202 (29.70%), Postives = 101/202 (50.00%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF------------AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 RK GQH++ + I + + A A G ++EIGPG ++T L+ + IE D+ + +R S QL V++ D +R L L E+ +S+ +VV N+P+NIST ++ LL ++ + +LQ+E R+V PS TS+Y +++ + + E VP +F P P+VD+A+V Sbjct: 6 RKRFGQHFLTDRLIIEGIVEAIAPLPGQPMVEIGPGLAAMTRPLVERLGHLTVIELDRDLARQLR----SNPQLTVIESDV----LRVDFLQLAEQVQSAGALRGAASQTPSPCKLRVVGNLPYNISTPILFHLLDAVEVIEDQHFMLQKEVIDRMVAMPS--TSDYGRLSVMLQWRYAMENVLYVPPQSFDPPPRVDSAIV 197
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BURP8 (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 62/229 (27.07%), Postives = 113/229 (49.34%), Query Frame = 1 Query: 127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +G F RK GQ+++++ I D + Q G+ ++EIGPG G+LT L+ AT + A+E D+ ++G ++++F ++ +L L DF +L ++V N+P+NIS+ ++ L + + +LQ E R+V EP + + +++ + + + VP +F P PKVD+A+V + PAV K +V++AF Sbjct: 10 QGHFARKRFGQNFLVDLGIIDSIVDVIRPQRGERMVEIGPGLGALTEPLVERLATPEAPLHAVELDRDLIGRLKKKFGNLLELHEGDALAFDFGSLAGEGDKPTL-----------RIVGNLPYNISSPLLFHLATFAERVIDQHFMLQNEVVERMVAEPG--SKAFSRLSVMLQYRYVIDKLLDVPPESFQPPPKVDSAIVRMIPYAPHELPAVDEIK-LGEVVTAAF 224
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACFR (Ribosomal RNA small subunit methyltransferase A OS=Bacteroides fragilis GN=rsmA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 P+K LGQH++ + ++ +A +LE+GPG G LT L+ V +E D V +RE + S++ ++++DF+K +++ LF+ + N P+NIS+ + ++L D+ ++Q+E A R+ P +T Y +++ + + EY F V F P PKV +AV+ Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVKKERLVKVVEVDYESVAYLREAYPSLED-NIIEDDFLKMNLQ----RLFDGHP-----FVLTGNYPYNISSQIFFKMLDNKDLIPCCTGMIQKEVAERIAAGPGSKT--YGILSVLIQAWYRVEYLFTVNEQVFNPPPKVKSAVI 184
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACFN (Ribosomal RNA small subunit methyltransferase A OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 1 Query: 139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708 P+K LGQH++ + ++ +A +LE+GPG G LT L+ V +E D V +RE + S++ ++++DF+K +++ LF+ + N P+NIS+ + ++L D+ ++Q+E A R+ P +T Y +++ + + EY F V F P PKV +AV+ Sbjct: 6 PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVKKERLVKVVEVDYESVAYLREAYPSLED-NIIEDDFLKMNLQ----RLFDGHP-----FVLTGNYPYNISSQIFFKMLDNKDLIPCCTGMIQKEVAERIAAGPGSKT--YGILSVLIQAWYRVEYLFTVNEQVFNPPPKVKSAVI 184
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_AYWBP (Ribosomal RNA small subunit methyltransferase A OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rsmA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 54/216 (25.00%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789 +K GQ+++ + + +++ A++ + + VLEIGPG G+LT +++ VLA E D + + F + + + ++ +DF+K +L F+ S + ++ N+P+ I++ ++ +++ I ++ +++Q+E +RL+ Y +++ + F E +V R FFP PKVD+ V+ KL + + T K F V ++F Sbjct: 6 KKKYGQNFLTDVNLLNKIVTKASITDKN-VLEIGPGKGALTKIIVPQAKNVLAYEIDATLKPFL--NFENHNNVNIIYDDFLK----RDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKIIDTPQI-NDATIMIQKEVGMRLLAQP-NNKNYNALSVIIQFLFSIEKIQEVKRHMFFPTPKVDSIVI--KLTKNNNI-LPTFLKQFIKFVKNSF 209 The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bpback to top |