CX043893

Overview
NameCX043893
Unique NameCX043893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_NEIM0 (Ribosomal RNA small subunit methyltransferase A OS=Neisseria meningitidis serogroup C (strain 053442) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE-RFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQ+++ ++ I   +  A   Q  D+V+EIGPG  ++T  L      +  +E D+ +V  ++   FA    I +  VLQ DF                   +G  K+V N+P+NIST ++ +L  + D   ++  +LQ+E   R+V  + ++++Y  + + + ++ + E    VP  +F P PKVD+AVV
Sbjct:    7 RKRFGQNFLQDTRIISDIVNAVRPQADDVVIEIGPGLAAITEPLAKKLNRLHVVEIDRDIVCRLKTLPFADKLVIHEGDVLQFDF----------------NGIAGKKKIVGNLPYNISTPLLFKLAEVADDVVDMHFMLQKEVVDRMV-AAPKSNDYGRLGVMLQYFFDMELLIDVPPESFDPAPKVDSAVV 182          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MYCVP (Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 61/224 (27.23%), Postives = 107/224 (47.77%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTS-TKSFFSMVSSAF 789
            PRKS GQ+++ ++    ++ +A+++   D VLE+GPG GSLT  LL+ GA V A+E D     Q    +     + +++L VL  D +           F++   +     +VAN+P+N++   +  LL        V++++Q E A RL  EP     +Y   +  V F+        V  T F+P P+V + +V     + + +P      +  F ++  AF
Sbjct:   22 PRKSFGQNFVHDANTVRRIVSASSINRSDHVLEVGPGLGSLTLALLDRGAKVTAVEIDPVLANQLPTTIAAHSHSEVNRLTVLNRDIL----------TFKQSDMTEMPTALVANLPYNVAVPALLHLLAEFPSIRTVMVMVQAEVAERLAAEPG--GKDYGVPSAKVRFFGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDPEFRQQVFELIDVAF 233          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_MYCSS (Ribosomal RNA small subunit methyltransferase A OS=Mycobacterium sp. (strain MCS) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 65/224 (29.02%), Postives = 111/224 (49.55%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD-----QHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKS-FFSMVSSAF 789
            PRKS GQ+++ ++    ++ +A+ V   D VL++GPG GSLT  LL+ GA V A+E D     Q    +     + I++L VL +D     I + M S  E + ++     +VAN+P+N++   +  LL        V++++Q E A RL  +P     +Y   +  V FY        V  T F+P P+V + +V     + + +P     ++  F ++  AF
Sbjct:   22 PRKSFGQNFVHDANTVRRIVSASGVHRHDHVLKVGPGLGSLTLALLDRGAHVTAVEIDPLLAQQLPTTIADHSHSEINRLTVLNQD-----ILTLMPSDLENQPTA-----LVANLPYNVAVPALLHLLAEFPTIRSVMVMVQAEVAERLAADPG--GKDYGVPSAKVRFYGNVRRYGMVSPTVFWPIPRVYSGLVRIDRYETSPWPTDADFRAQVFDLIDIAF 233          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_AQUAE (Ribosomal RNA small subunit methyltransferase A OS=Aquifex aeolicus GN=rsmA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 65/222 (29.28%), Postives = 111/222 (50.00%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL-AIEKDQHMVGLVRERFASI--DQLKVLQED---FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +KS GQH +++  +  ++A    ++EG+ V+E+G GTG+LT VLL      L  IE D+ MV    E   SI  ++L+V+ ED   F  C +   +              KVV N+P+N+++ +I+  +   D     V ++Q+E A +L        +   +++FV  + +  Y   VP   F P PKV +AV+  KL +   +P V   K++   ++  F
Sbjct:    5 KKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMV----ENLKSIGDERLEVINEDASKFPFCSLGKEL--------------KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKL----QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVI--KLVKNEKFP-VKDLKNYKKFLTKIF 201          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_RALEJ (Ribosomal RNA small subunit methyltransferase A OS=Ralstonia eutropha (strain JMP134) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 57/195 (29.23%), Postives = 98/195 (50.26%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            +G   RK  GQ+++++  I   +  A      D+++EIGPG G+LT+ LL     +  +E D+ +V  +R R+   D+L+V        H    +   F R        ++V N+P+NIS+ ++  L+   D   +   +LQ+E   R+V EP   +  +  ++I +      E+   VP  +F P PKVD+AVV
Sbjct:    7 QGHVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVPQMQVVELDRDLVERLRRRYG--DRLQV--------HAGDALAFDFGRLAVPGRPLRIVGNLPYNISSPLLFHLMDYADHVHDQHFMLQKEVVDRMVAEPG--SKAFGRLSIMLQVRYHMEHVLDVPPGSFNPPPKVDSAVV 189          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_POLNA (Ribosomal RNA small subunit methyltransferase A OS=Polaromonas naphthalenivorans (strain CJ2) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 60/202 (29.70%), Postives = 101/202 (50.00%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF------------AKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            RK  GQH++ +  I + +  A A   G  ++EIGPG  ++T  L+     +  IE D+ +   +R    S  QL V++ D     +R   L L E+ +S+                +VV N+P+NIST ++  LL   ++  +   +LQ+E   R+V  PS  TS+Y  +++ + +    E    VP  +F P P+VD+A+V
Sbjct:    6 RKRFGQHFLTDRLIIEGIVEAIAPLPGQPMVEIGPGLAAMTRPLVERLGHLTVIELDRDLARQLR----SNPQLTVIESDV----LRVDFLQLAEQVQSAGALRGAASQTPSPCKLRVVGNLPYNISTPILFHLLDAVEVIEDQHFMLQKEVIDRMVAMPS--TSDYGRLSVMLQWRYAMENVLYVPPQSFDPPPRVDSAIV 197          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BURP8 (Ribosomal RNA small subunit methyltransferase A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 62/229 (27.07%), Postives = 113/229 (49.34%), Query Frame = 1
Query:  127 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT----VLAIEKDQHMVGLVRERFASIDQL---KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +G F RK  GQ+++++  I D +      Q G+ ++EIGPG G+LT  L+   AT    + A+E D+ ++G ++++F ++ +L     L  DF          +L           ++V N+P+NIS+ ++  L    +   +   +LQ E   R+V EP   +  +  +++ + +    +    VP  +F P PKVD+A+V        + PAV   K    +V++AF
Sbjct:   10 QGHFARKRFGQNFLVDLGIIDSIVDVIRPQRGERMVEIGPGLGALTEPLVERLATPEAPLHAVELDRDLIGRLKKKFGNLLELHEGDALAFDFGSLAGEGDKPTL-----------RIVGNLPYNISSPLLFHLATFAERVIDQHFMLQNEVVERMVAEPG--SKAFSRLSVMLQYRYVIDKLLDVPPESFQPPPKVDSAIVRMIPYAPHELPAVDEIK-LGEVVTAAF 224          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACFR (Ribosomal RNA small subunit methyltransferase A OS=Bacteroides fragilis GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            P+K LGQH++ + ++   +A          +LE+GPG G LT  L+     V  +E D   V  +RE + S++   ++++DF+K +++     LF+          +  N P+NIS+ +  ++L   D+      ++Q+E A R+   P  +T  Y  +++ +  +   EY F V    F P PKV +AV+
Sbjct:    6 PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVKKERLVKVVEVDYESVAYLREAYPSLED-NIIEDDFLKMNLQ----RLFDGHP-----FVLTGNYPYNISSQIFFKMLDNKDLIPCCTGMIQKEVAERIAAGPGSKT--YGILSVLIQAWYRVEYLFTVNEQVFNPPPKVKSAVI 184          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_BACFN (Ribosomal RNA small subunit methyltransferase A OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 1
Query:  139 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVV 708
            P+K LGQH++ + ++   +A          +LE+GPG G LT  L+     V  +E D   V  +RE + S++   ++++DF+K +++     LF+          +  N P+NIS+ +  ++L   D+      ++Q+E A R+   P  +T  Y  +++ +  +   EY F V    F P PKV +AV+
Sbjct:    6 PKKFLGQHFLKDLKVAQDIADTVDTFPDLPILEVGPGMGVLTQFLVKKERLVKVVEVDYESVAYLREAYPSLED-NIIEDDFLKMNLQ----RLFDGHP-----FVLTGNYPYNISSQIFFKMLDNKDLIPCCTGMIQKEVAERIAAGPGSKT--YGILSVLIQAWYRVEYLFTVNEQVFNPPPKVKSAVI 184          
BLAST of CX043893 vs. ExPASy Swiss-Prot
Match: RSMA_AYWBP (Ribosomal RNA small subunit methyltransferase A OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rsmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 54/216 (25.00%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  142 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVSSAF 789
            +K  GQ+++ +  + +++   A++ + + VLEIGPG G+LT +++     VLA E D  +   +   F + + + ++ +DF+K      +L  F+   S +    ++ N+P+ I++ ++ +++    I ++  +++Q+E  +RL+        Y  +++ + F    E   +V R  FFP PKVD+ V+  KL +  +    T  K F   V ++F
Sbjct:    6 KKKYGQNFLTDVNLLNKIVTKASITDKN-VLEIGPGKGALTKIIVPQAKNVLAYEIDATLKPFL--NFENHNNVNIIYDDFLK----RDLLKDFDHYFSPNSQLSLIGNLPYYITSPILFKIIDTPQI-NDATIMIQKEVGMRLLAQP-NNKNYNALSVIIQFLFSIEKIQEVKRHMFFPTPKVDSIVI--KLTKNNNI-LPTFLKQFIKFVKNSF 209          
The following BLAST results are available for this feature:
BLAST of CX043893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RSMA_NEIM01.179e-1429.02Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCVP1.179e-1427.23Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_MYCSS1.179e-1429.02Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_AQUAE1.179e-1429.28Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_RALEJ1.540e-1429.23Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_POLNA1.540e-1429.70Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BURP81.540e-1427.07Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACFR1.540e-1427.75Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_BACFN1.540e-1427.75Ribosomal RNA small subunit methyltransferase A OS... [more]
RSMA_AYWBP1.540e-1425.00Ribosomal RNA small subunit methyltransferase A OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14B02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14B02-D4-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043893 ID=CX043893; Name=CX043893; organism=Citrus sinensis; type=EST; length=791bp
CCGAAACCAACACGCCCGGCCCACAGTAGCATCGCCGGCGTACAAAAAGG
AGCAGCATCTGCATGCATTGTTTGCGCAAGAAGCCAAGACGACGACTATC
ACGCAACTATTAAAGCCCTCAACTCCAAAGGCCGTTTCCCCAGAAAATCC
CTCGGACAGCATTACATGTTAAATTCTGAAATAAACGATCAGCTTGCAGC
CGCCGCCGCCGTTCAAGAAGGTGACATCGTGTTAGAGATTGGGCCTGGAA
CCGGTTCTTTGACTAATGTTCTGTTAAATGCCGGCGCCACTGTCCTAGCC
ATCGAGAAGGATCAGCATATGGTTGGTCTTGTGAGAGAAAGATTCGCAAG
TATAGACCAGCTCAAGGTTCTGCAAGAGGATTTTGTCAAATGTCACATCC
GCTCCCATATGTTGTCGTTGTTTGAAAGAAGAAAGTCTAGCTCAGGGTTT
GCTAAGGTGGTTGCCAATATACCCTTTAATATCAGTACAGATGTAATCAA
GCAACTTCTTCCTATGGGTGACATTTTTTCTGAAGTTGTTCTCTTACTTC
AGGAAGAAACAGCTTTGCGCTTGGTAGAACCTTCCTTGCGTACATCTGAG
TACCGACCCATCAATATCTTTGTCAATTTTTATTCAGAGCCTGAATACAA
ATTCAAAGTCCCAAGGACAAACTTTTTCCCTCAGCCCAAAGTTGATGCAG
CTGTTGTTACATTCAAGCTGAAGCAAGCTACAGATTATCCTGCAGTTACC
TCCACAAAGAGCTTCTTTTCAATGGTCAGTTCTGCATTTAA
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